Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A06
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical t...    29   3.2  
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr...    27   7.4  
At5g39180.1 68418.m04742 germin-like protein, putative similar t...    27   9.7  
At5g39150.1 68418.m04736 germin-like protein, putative similar t...    27   9.7  

>At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical to
           lycopene beta cyclase GI:1399183|GB:AAB53337
           [Arabidopsis thaliana]
          Length = 501

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 313 IPRG*VLIGGVAPILGHLHPTKPILVARRL*TSPLAARSLV 191
           +P+  V IGG A   G +HP+   +VAR L  +P+ A ++V
Sbjct: 346 LPQRVVGIGGTA---GMVHPSTGYMVARTLAAAPIVANAIV 383


>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
           protein-related contains weak hit to Pfam profile:
           PF00097 zinc finger, C3HC4 type (RING finger); weak
           similarity to RING finger protein 8 (Swiss-Prot:O76064)
           [Homo sapiens]
          Length = 738

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 164 CGRRFNEHPLQLSILAETISEVSYAFETTMARPSVIKM 51
           C RRFN  P   S+L E ++  +  +  +M +   ++M
Sbjct: 300 CPRRFNLSPSMKSLLRENVAAFAAGYRASMEQKKQVQM 337


>At5g39180.1 68418.m04742 germin-like protein, putative similar to
           germin-like protein (GLP6) - Arabidopsis thaliana,
           EMBL:U75194 [SP|P92997]
          Length = 221

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 40  NMKLILITLGLAIVVSNAYDTSDI 111
           +M LILITL   + ++ AYD S +
Sbjct: 4   SMSLILITLSALVTIAKAYDPSPL 27


>At5g39150.1 68418.m04736 germin-like protein, putative similar to
           germin -like protein GLP6, Arabidopsis thaliana,
           EMBL:ATU75194 [SP|P92997]; contains PS00725 Germin
           family signature
          Length = 221

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 40  NMKLILITLGLAIVVSNAYDTSDI 111
           +M LILITL   + ++ AYD S +
Sbjct: 4   SMSLILITLSALVTIAKAYDPSPL 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,433,769
Number of Sequences: 28952
Number of extensions: 204661
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)