Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A04
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-15|AAK18858.4|  567|Caenorhabditis elegans Hypothetical p...    29   1.4  
U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical pr...    28   3.1  

>U32305-15|AAK18858.4|  567|Caenorhabditis elegans Hypothetical
           protein B0336.11a protein.
          Length = 567

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 202 LLLQ*SFFLHQRIFFFLLQATLILLQWR-KEGNIPLFISILNAVRN 336
           L+ Q S+ L  R    LL+ TL+ L  + KE ++PL  +I+ AV+N
Sbjct: 520 LIFQFSYILQMRSDNALLRETLVSLSSQIKEASVPLQETIVEAVKN 565


>U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical
           protein C50E3.7 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 20/69 (28%), Positives = 36/69 (52%)
 Frame = +1

Query: 109 VHLFT*SEQITSKIHYYYLISIFLKSQKYDALLLQ*SFFLHQRIFFFLLQATLILLQWRK 288
           V+LF  S Q+ S + +    ++F KS  +  LL+Q  F +  R+F  +L   +I+     
Sbjct: 88  VNLFNISVQL-SCVKFIDKRALFKKSTFFKILLIQ-CFVVSLRVFLHILTICIIIYVSNT 145

Query: 289 EGNIPLFIS 315
           E ++  F+S
Sbjct: 146 ESSVSKFLS 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,713,133
Number of Sequences: 27780
Number of extensions: 141880
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)