Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A03
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    25   1.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   2.1  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   2.7  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    24   3.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   4.7  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    23   8.3  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    23   8.3  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    23   8.3  

>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 142 VLXSLNSCSVIITYLMSTLICITNIKNIQQLYL*NYK 252
           V  + N C+ II +L +       ++ I QLYL N K
Sbjct: 438 VFAACNLCAAIIIFLFAKETKGLTLEEINQLYLSNIK 474


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +1

Query: 112 GSESNQPPLKVLXSLNSCSVIITYLMSTLICITNIKNIQQLYL*NYK*IMYFKKK 276
           GS++++P LKVL +L + +  I   +  +  + N+    Q +L  +   + FKKK
Sbjct: 790 GSDNSRPSLKVLKTLLNEAETICCPLQEVSLVRNLVKTAQQWLDKF--AIIFKKK 842


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 76  SRSPLSRATPSSGSESNQP 132
           SR P  RATPS+G +   P
Sbjct: 435 SRQPTVRATPSTGKQIEPP 453


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 64  ATLCSRSPLSRATPSSGSES 123
           AT  S SP++ A P SGS S
Sbjct: 633 ATSASDSPITSAQPQSGSNS 652


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 61  KATLCSRSPLSRATPSSGSESNQP 132
           +A L SRS  +  +P+S   SNQP
Sbjct: 484 RAALSSRSQSNLLSPTSTGASNQP 507


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 142 VLXSLNSCSVIITYLMSTLICITNIKNIQQLYL 240
           +  S N C+ I+T+L +       ++ I +LYL
Sbjct: 436 IFASCNLCASIVTFLFAHESKGLTLEEINELYL 468


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 31  LPLGQLLRT*KATLCSRSPLSRATPSSGSESNQP-PLKVLXSLNSCSVII 177
           LPL   L T K  +C+++ L+ A  +   + N P    ++ SL     II
Sbjct: 54  LPLKWKLITVKENICTKTNLTTAASNMLKDYNSPFDASIVESLKKAGGII 103


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 115 SESNQPPLKVLXSLNSCSVIITYLMSTL 198
           ++ + P  K++  LN C VI +YL + +
Sbjct: 263 NDYHAPRDKIICLLNCCKVIFSYLRNVV 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 927,546
Number of Sequences: 5004
Number of extensions: 14792
Number of successful extensions: 47
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)