Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A03
(281 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 28 0.97
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474... 28 1.3
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 26 3.9
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 26 3.9
12_02_1225 - 27164595-27164842,27164959-27165133,27165213-271653... 26 5.2
10_01_0260 - 2726204-2727370 25 6.8
07_03_1178 - 24580294-24580727,24581749-24582274 25 6.8
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 25 6.8
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 25 9.0
>06_01_0485 -
3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 28.3 bits (60), Expect = 0.97
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 61 KATLCSRSPLSRATPSSGSESNQPPLKVLXSLNSCSVIITYLMSTLICITNIKNI 225
KA + + +P + +SNQ L + S N C+ II Y T + N+ +I
Sbjct: 442 KAQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASI 496
>02_05_1133 +
34346894-34347121,34347222-34347283,34347373-34347460,
34348005-34348268,34348346-34348586,34348672-34348748,
34348837-34349007,34349084-34349176,34349257-34349406,
34349491-34349577,34349656-34349820,34349900-34350019,
34350244-34350446,34350547-34350696,34350779-34350926,
34351046-34351129,34351207-34351308
Length = 810
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 61 KATLCSRSPLSRATPSSGSESNQPPLKVLXSLNSCSVIITYLMSTLICITNIKNI 225
KA + + +P S +SNQ L + S N C+ II + T + N+ +I
Sbjct: 395 KAQIETGTPYMLYKDSCNRKSNQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASI 449
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 61 KATLCSRSPLSRATPSSGSESNQPPL 138
K + CS SP S G E QPPL
Sbjct: 27 KGSQCSSSPRSPRPGGGGVEGEQPPL 52
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 54 DLEGDVVFKVTIVKSYAVFWVGIESAPVKG 143
+L+ D+ V I+ + FW + P+KG
Sbjct: 294 ELKSDLDIPVEIINKFEEFWAASRATPLKG 323
>12_02_1225 -
27164595-27164842,27164959-27165133,27165213-27165307,
27165391-27165444,27165794-27165868,27165961-27166081,
27166494-27166549,27166698-27166762,27166962-27167050,
27167155-27167812,27168182-27168202,27168777-27168859,
27169081-27169136,27169413-27169619,27170628-27170760
Length = 711
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 85 PLSRATPSSGSESNQPPLKVLXSLNSCSV 171
P R + G+ SNQ LK + S+ CSV
Sbjct: 595 PPKRIIATGGASSNQIILKTMASIFGCSV 623
>10_01_0260 - 2726204-2727370
Length = 388
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 60 EGDVVFKVTIVKSYAVFWVGIESAPVKGSXVIKFMFSH 173
+GDVVF T+ + V+ ++ V GS ++K ++S+
Sbjct: 333 DGDVVFIRTVAGVFLVWLDTLKFKKVSGSLLMKTVYSY 370
>07_03_1178 - 24580294-24580727,24581749-24582274
Length = 319
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 103 PSSGSESNQPPLKVLXSL 156
P++GS QPPL+ L SL
Sbjct: 214 PANGSMKEQPPLRTLRSL 231
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 30 LTPWTAPKDLEGDVVFKVTIVKSY 101
LT +TAP+DL+G+ ++K +Y
Sbjct: 551 LTQFTAPEDLDGENMYKCGRCSAY 574
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 10 IRQTDCFLPLGQLLRT*KATLCSRSPLSRATPSSGSESNQPP 135
+R + LP QLL+ CS S +PSS S++ +PP
Sbjct: 146 LRGSRFLLPTQQLLQE----FCSLPVKSTTSPSSASKATKPP 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,818,993
Number of Sequences: 37544
Number of extensions: 96344
Number of successful extensions: 272
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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