Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A03
         (281 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   27   2.3  
SB_30575| Best HMM Match : Pico_P2A (HMM E-Value=5.9)                  26   4.1  
SB_23511| Best HMM Match : Abhydrolase_1 (HMM E-Value=2.7e-12)         26   5.4  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    25   7.1  
SB_49307| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.64)          25   9.4  
SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)                        25   9.4  
SB_3979| Best HMM Match : Syndecan (HMM E-Value=0.0017)                25   9.4  

>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 61   KATLCSRSPLSRATPSSGSESNQPPLKVLXSLNSCS 168
            +A++C+  P+   + +SGS   Q PL    SL+  S
Sbjct: 1500 RASICAALPVRNGSTTSGSNKRQKPLPGPTSLSGTS 1535


>SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 537

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 45  APKDLEGDVVFKVTIVKSYAVFWVGIESAPVKGSXVIKF-MFSHHHLLDVNINLYYKH 215
           APK +      ++   KS   FWV +E   ++     +F +  H H+L   ++   +H
Sbjct: 12  APKRMWRASDQQIAAPKSVGPFWVNMEEKTMRTDIDFRFRLLRHFHVLSTGVDFSDRH 69


>SB_30575| Best HMM Match : Pico_P2A (HMM E-Value=5.9)
          Length = 564

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 15  TDRLFLTPWTAPKDLE 62
           TDR FL  WT P+ LE
Sbjct: 206 TDRAFLIDWTTPEPLE 221


>SB_23511| Best HMM Match : Abhydrolase_1 (HMM E-Value=2.7e-12)
          Length = 518

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 79  RSPLSRAT-PSSGSESNQPPLKVLXSLNSCSVIITYLMSTLICITNIKNIQQL 234
           R  L R T P+S  +S  PP      +N   VI+   +  +  + N+ +I Q+
Sbjct: 62  RGALDRLTSPTSAMKSPSPPPSSSRHINQRLVIVVVCLCLVARVLNLADIPQM 114


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 45   APKD--LEGDVVFKVTIVKSYAVFWVGIESAPVKGSXVIKFMFSHHHLLDVN-INLYYKH 215
            AP D  L G  V +  +VK YA+  +  +   V  S V + +  + ++ +VN  NL  K 
Sbjct: 1945 APYDITLTGSPVVEENVVKGYAIGSLSCKDPDVGQSHVFQVVGKYDNVFEVNGTNLIVKD 2004

Query: 216  *KY 224
              Y
Sbjct: 2005 PSY 2007


>SB_49307| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.64)
          Length = 317

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 133 GADSIPTQKTA*LLTMVTLNTTSPSKSLGAVQGV 32
           GAD + TQ+ + LL ++T++T+   K L   QGV
Sbjct: 137 GADVLSTQRKSHLLILLTVHTSHQLKPLS--QGV 168


>SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 106 SSGSESNQPPLKVLXSLNSCSVIITYLMSTLI 201
           S G  + Q   K+L SLN  S I  +L +TL+
Sbjct: 5   SCGEAATQTEKKLLFSLNVTSGITAFLENTLV 36


>SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)
          Length = 158

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 102 AVFWVGIESAPVKGSXVIKFMFSHHH 179
           AV W  IE+ P  G  +    FS HH
Sbjct: 18  AVIWWCIEALPWLGDRIAPERFSRHH 43


>SB_3979| Best HMM Match : Syndecan (HMM E-Value=0.0017)
          Length = 436

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 160 NLMTXEPLTGADSIPTQKTA*LLTMVTLNTTSPSKSLGAVQGVRNSLSV 14
           ++   EP+   DS+ TQ T  L T    +T++P+    A     N  +V
Sbjct: 91  DVQNDEPIRRNDSVATQPTLALNTSKVSSTSTPAAKETASNNSNNKTTV 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,925,326
Number of Sequences: 59808
Number of extensions: 118055
Number of successful extensions: 291
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)