Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A03
         (281 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   2.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    19   8.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    19   8.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 87  IVKSYAVFWVGIESAPVK 140
           ++ S+  FW+  E+AP +
Sbjct: 259 VIMSWVSFWIKPEAAPAR 276


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 211 NIKNIQQLYL*NYK*IMY 264
           N  N ++LY  NYK + Y
Sbjct: 92  NNNNYKKLYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 211 NIKNIQQLYL*NYK*IMY 264
           N  N ++LY  NYK + Y
Sbjct: 92  NNNNYKKLYCNNYKKLYY 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,260
Number of Sequences: 438
Number of extensions: 916
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)