Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A03
         (281 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80640.1 68414.m09463 protein kinase family protein contains ...    32   0.068
At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger) fa...    28   0.84 
At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase sm...    27   1.5  
At4g23450.1 68417.m03380 zinc finger (C3HC4-type RING finger) fa...    26   3.4  
At1g43650.1 68414.m05011 integral membrane family protein / nodu...    26   4.5  
At5g24480.1 68418.m02885 hypothetical protein similar to unknown...    25   5.9  
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    25   5.9  
At5g36970.1 68418.m04433 harpin-induced protein-related / HIN1-r...    25   7.8  

>At1g80640.1 68414.m09463 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 427

 Score = 31.9 bits (69), Expect = 0.068
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
 Frame = +1

Query: 85  PLSRATPSSGSESNQPPL-KVL--XSLNSCSVIITYLMSTLICIT 210
           P+S+A+P  G++S  PP+ KV+    LN   +I   + S+L+C+T
Sbjct: 41  PISQASPRMGAQSPGPPIVKVVLRQDLNKKILIALIVSSSLLCVT 85


>At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 200

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 88  LSRATPSSGSESNQPPLKVLXSLNSCSVIITYLMSTLICITNI 216
           ++R++   G+ S  PP ++L +     VI++ L+  L+C+  +
Sbjct: 1   MTRSSRFLGTASPPPPEEILAAETDMVVILSALLCALVCVAGL 43


>At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase small
           chain, putative / ribonucleotide reductase, putative
           similar to ribonucleotide reductase GI:4151068 from
           [Nicotiana tabacum]
          Length = 816

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 106 SSGSESNQPPLKVLXSLNSCSVIITYLMSTLICITNIKNI 225
           S   +SNQ  L  + S N C+ II Y   T   + N+ +I
Sbjct: 410 SCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASI 449


>At4g23450.1 68417.m03380 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 153

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 67  TLCSRSPLSRATPSSGSESNQPPL 138
           T+    PLSRATPSS S +   PL
Sbjct: 16  TIDEHLPLSRATPSSLSNAYSSPL 39


>At1g43650.1 68414.m05011 integral membrane family protein / nodulin
           MtN21-related similar to MtN21 GI:2598575 (root nodule
           development) from [Medicago truncatula]similar to MtN21
           GI:2598575 (root nodule development) from [Medicago
           truncatula]
          Length = 343

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 75  FKVTIVKSYAVFWVGIESAPVKGSXVIKFMFSHHHLLDVNINLYYKH*KYTTIIF 239
           F    +  +A F    +S+P+    ++K  F     L +++NLYY   + TT  F
Sbjct: 45  FAALALSPFAFFLESSKSSPLSFILLLKIFFISLCGLTLSLNLYYVAIENTTATF 99


>At5g24480.1 68418.m02885 hypothetical protein similar to unknown
           protein (gb|AAD32930.1)
          Length = 350

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +1

Query: 4   QRIRQTDCFLPLGQLLRT*KATLCSRSPLSRATPSSGSESNQPPL 138
           Q I   DC L   +  R+  ATL S  PLS +T    S + QP L
Sbjct: 14  QSIHFFDCSLTSDRGQRSWPATLPSPQPLSASTFLKCSPTEQPHL 58


>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1183

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 14  DRQTVSYPLDSS*GLRRRRCVQGHHCQELRRLLGRNRI 127
           D   + Y LDS+ G RR   +  H C+    LL RN +
Sbjct: 510 DPTEIHYVLDSNTGTRRVEGLSLHLCEMADTLLLRNSV 547


>At5g36970.1 68418.m04433 harpin-induced protein-related /
           HIN1-related / harpin-responsive protein-related weak
           similarity to harpin inducing protein (hin1), Nicotiana
           tabacum, EMBL:AF212183, GI:1619321
          Length = 248

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = +3

Query: 18  DRLFLTPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESAPVKGSXVIKFMFSHHHLLDVNI 197
           DRL LT +   +DL     F VTI        +GI     +    I  ++    + + ++
Sbjct: 97  DRLQLTRFQLNQDLSLSTAFNVTITAKNPNEKIGIY---YEDGSKISVLYMQTRISNGSL 153

Query: 198 NLYYKH*KYTTIIFIKL 248
             +Y+  + TTII +++
Sbjct: 154 PKFYQGHENTTIILVEM 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,815,930
Number of Sequences: 28952
Number of extensions: 79677
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 241748928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)