Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A01
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ...   177   3e-45
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ...   177   3e-45
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo...   175   1e-44
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ...   175   1e-44
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    61   4e-10
At4g35880.1 68417.m05095 aspartyl protease family protein contai...    28   4.2  
At3g51360.1 68416.m05624 aspartyl protease family protein contai...    27   7.3  
At3g27320.1 68416.m03414 expressed protein low similarity to PrM...    27   9.7  

>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  177 bits (432), Expect = 3e-45
 Identities = 79/109 (72%), Positives = 98/109 (89%)
 Frame = +1

Query: 127 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPC 306
           +A +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPTKVL+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 307 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 453
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  177 bits (432), Expect = 3e-45
 Identities = 79/109 (72%), Positives = 98/109 (89%)
 Frame = +1

Query: 127 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPC 306
           +A +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPTKVL+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 307 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 453
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
           ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
          Length = 124

 Score =  175 bits (427), Expect = 1e-44
 Identities = 78/106 (73%), Positives = 96/106 (90%)
 Frame = +1

Query: 136 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEG 315
           +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPTKVL+ITTRK PCGEG
Sbjct: 19  LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEG 78

Query: 316 SKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 453
           + TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 79  TNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
           ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
          Length = 124

 Score =  175 bits (427), Expect = 1e-44
 Identities = 78/106 (73%), Positives = 96/106 (90%)
 Frame = +1

Query: 136 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEG 315
           +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPTKVL+ITTRK PCGEG
Sbjct: 19  LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEG 78

Query: 316 SKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 453
           + TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 79  TNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
 Frame = +1

Query: 67  PEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRV 246
           PE  +  A+ V S   I     +++P  +IRI L S  V  +E  C  +++ A+    + 
Sbjct: 66  PEILDEPASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKT 125

Query: 247 KGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQITSINIEPG 423
            GPV +PTK       K+P       +  F++R H+R+ID L+  ++ +  +  +++  G
Sbjct: 126 MGPVPLPTKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAG 184

Query: 424 VEVEVTI 444
           V+VEV +
Sbjct: 185 VDVEVKL 191


>At4g35880.1 68417.m05095 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 524

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 503 LCSCKNSKINLFGSCAYASAMVTS-TSTPGSILIEVICFTISE 378
           LC+ +N  +  F +C Y  + V++ TST G ++ +V+  T  +
Sbjct: 174 LCAQRNQCLGTFSTCPYMVSYVSAQTSTSGILMEDVMHLTTED 216


>At3g51360.1 68416.m05624 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 488

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 503 LCSCKNSKINLFGSCAYASAMVTSTSTPGSILIE-VICFTISEGECR 366
           LC+ +N  I+    C Y    ++  S    +L+E VI  +  EGE R
Sbjct: 157 LCALRNRCISPVSDCPYRIRYLSPGSKSTGVLVEDVIHMSTEEGEAR 203


>At3g27320.1 68416.m03414 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 460

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 15  VLRFSAEQFLI*KLFISTGISQQHGSRCR---VRKGYREAPG*DLTDPSYQDHADVTQCT 185
           VL++  +Q  + +   S G S++ G   +   V K   +A G  L +P   +HAD ++C 
Sbjct: 225 VLKWLGKQANLAECNKSMGNSRRPGGEVKKSEVNKHIVDAFGASLVEPWLANHADPSRCV 284

Query: 186 LTG 194
           L G
Sbjct: 285 LLG 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,850,489
Number of Sequences: 28952
Number of extensions: 249927
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)