Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P24
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    27   2.0  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   4.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   4.6  

>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 350 FLXLMAPI-KSXXSXNKYTLDEKFTSSSRQYQSEVETIDFSDTK 478
           FL L++PI +S    + + LDE  ++      +EVE+ +F  T+
Sbjct: 99  FLYLLSPISQSSRDVSSHLLDESISNPINIPSTEVESSNFGQTR 142


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 213 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNP 308
           L+   K G+G G   + + FLGD+ Y  +  P
Sbjct: 243 LLAFDKIGSGSGDLSKCESFLGDILYMVSKEP 274


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 301 VASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTFLSFPDVYASLRS 143
           VAS   TSP  L+++ + PSP P    S + +T     T          SLRS
Sbjct: 549 VASPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRS 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,109
Number of Sequences: 5004
Number of extensions: 45739
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)