Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P24
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0750 - 6315126-6315896,6316371-6316784                           31   0.88 
08_01_0978 + 9841441-9842169,9842303-9842590,9842768-9843612,984...    29   3.5  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   4.7  

>11_01_0750 - 6315126-6315896,6316371-6316784
          Length = 394

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 437 YQSEVETIDFSDTKK-AADIINQWANEKTRGHIKSPISDDTIDPN 568
           Y S  +  DF +  + A D IN W  + T+G + + +   TID N
Sbjct: 126 YGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLLPAGTIDQN 170


>08_01_0978 +
           9841441-9842169,9842303-9842590,9842768-9843612,
           9843941-9844223,9844303-9844416
          Length = 752

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 416 FTSSSRQYQSEVETIDFSDTKKA-ADIINQWANEKTRGHIKSPISDDTID-PNAA 574
           +     ++  E E +  S+T++  ADI  QWA    R  +K   SD+T+  PN A
Sbjct: 182 YAGKQAEWDKEDEAVAESNTQQVLADIPVQWARNWARARVKKN-SDETLSFPNPA 235


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 168 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPY 311
           G  +NV  SPL + + + L  +GAG  +R ++   LG    +E  + +
Sbjct: 32  GAGRNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAF 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,920
Number of Sequences: 37544
Number of extensions: 287441
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)