Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_P24
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 33 0.17
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 33 0.22
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94) 31 0.90
SB_18241| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4) 29 2.1
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 28 4.8
SB_33614| Best HMM Match : Ribosomal_S12 (HMM E-Value=6.8) 27 8.4
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 27 8.4
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +2
Query: 392 NKYTLDEKFTSSSRQ-YQSEVETIDFSDTK-KAADIINQWANEKTRGHIKSPISDDTID 562
+++ + E+F +R+ Y SE+ +DF + A +N W +++T+G+IK I I+
Sbjct: 65 DEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVIN 123
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +2
Query: 410 EKFTSSSRQ-YQSEVETIDF-SDTKKAADIINQWANEKTRGHIKSPISD 550
E+F +S++ + +E+ +D+ ++ A D +N+W +KT+ IK+ I +
Sbjct: 103 EEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNLIPE 151
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 371 IKSXXSXNKYTLDEKFTSSSRQYQSEVETIDFSDTKKAADIINQWANEK 517
+KS S + +D+ + S + +SEV +DF+ T+K + +N+ +EK
Sbjct: 965 VKSKTSSSPMEIDDSMSDKSHKTESEV--LDFAITEKQLEYVNKLQSEK 1011
>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
Length = 1047
Score = 30.7 bits (66), Expect = 0.90
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 359 LMAPIKSXXSXNKYTLDEKFTSSSRQYQSEV-ETIDFSDTKKAADIINQWANEKTRGHIK 535
+M I + +K T D + + +SEV E DFS K D + + +EK R HIK
Sbjct: 105 VMERILTERIHDKLTSDSELEPLLNELKSEVAEDYDFSVRKAIVDYVLKDPSEKNRLHIK 164
Query: 536 S 538
S
Sbjct: 165 S 165
>SB_18241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -3
Query: 577 GSCIRIYGVIRDWRF-NMSSGLLISPLINDVS 485
GSC+ GV R W+F +++ G L+S L N V+
Sbjct: 3 GSCLWKLGVFRAWKFGSVNDGFLLSGLSNQVA 34
>SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)
Length = 361
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 258 EIDKFLGDVDYSEATNPYISLSKTFS 335
++D F GD+ +EA+NP+I+ K S
Sbjct: 216 DMDSFTGDIPETEASNPFIAPQKVVS 241
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 529 MSSGLLISPLINDVSCFFGIAEVNSFNLALVL 434
+ G++ S LIND C+F VN +NLA+++
Sbjct: 1803 LGQGIVESVLINDFGCYF---TVNRYNLAMMV 1831
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 398 YTLDEKFTS-SSRQYQSEVETIDF-SDTKKAADIINQWANEKTRGHI 532
+++ ++FT + Y +++ +D+ +D + A +NQW E+T+ I
Sbjct: 62 FSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108
>SB_33614| Best HMM Match : Ribosomal_S12 (HMM E-Value=6.8)
Length = 201
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 384 RRXINILWMRNSRALPVSTKARLKLLTSAIPKKQLTSLISGLMRR 518
+R + LW+ +AL S+++ +++LTS P L + + R
Sbjct: 64 KRQTSNLWVSRGKALRSSSQSAVRVLTSGAPSSVLNYVFASTSNR 108
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 42 FAVIAVCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTS 167
+ + V ++ + F+H Y+R + AI K S L+KE TS
Sbjct: 1218 YGISNVLPLKKAFTFNHTYSRHGIFKAILKGSGNLIKEEVTS 1259
>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 769
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +3
Query: 102 RTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYK--SGAGEGSRVEIDKFL 275
R D +D ++ K + ++ G++ + +L S + R+E+ K L
Sbjct: 529 RMRFSDTVDIVDVEEAKRLHREALKQSATDPKTGLIDISILTTGLSASDRKRRLELAKSL 588
Query: 276 GDVDYSEATNPYISLSKTFSEM 341
+ S+ P + KTFSEM
Sbjct: 589 KALLTSKGKVPTVDYQKTFSEM 610
>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 331 KVLLRLMY-GLVASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGE 191
K+ R +Y +V L S ++L+I R PSP+PD R S +P+ +
Sbjct: 271 KLKTRFLYLKVVIKLEGGSDEDLAILDRSPSPSPDRRRQRSQSSPHSD 318
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,858,666
Number of Sequences: 59808
Number of extensions: 327693
Number of successful extensions: 802
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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