Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P24
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    31   0.56 
At4g36160.1 68417.m05146 no apical meristem (NAM) family protein...    28   3.9  
At3g43220.1 68416.m04562 phosphoinositide phosphatase family pro...    28   5.2  
At4g13330.1 68417.m02083 expressed protein                             27   9.0  
At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to...    27   9.0  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    27   9.0  

>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 437 YQSEVETIDFSDTKKAADI--INQWANEKTRGHIKSPISDDTI 559
           Y +    +DF+ TK A  I  +N WA   T G IK  +SDD+I
Sbjct: 118 YNATCNQVDFA-TKPAEVINEVNAWAEVHTNGLIKEILSDDSI 159


>At4g36160.1 68417.m05146 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751)  [Arabidopsis thaliana];
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 377

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 75  FYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVV--SSPLGVMMLMLLYKSGAGEG 248
           +YFF H+  +   G   ++ +M    +A  +G+DK V   S  +G+   ++ YK  A  G
Sbjct: 69  WYFFSHKDKKYPTGTRTNRATMAGFWKA--TGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 126

Query: 249 SRVE 260
            + +
Sbjct: 127 QKTD 130


>At3g43220.1 68416.m04562 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to SAC domain protein 3
           (SAC3) GI:31415722
          Length = 818

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +3

Query: 240 GEGSRVEIDKFLGDVDY-SEATNPYISLSKTFSEMNPDFFX*WPQ*NPXRRXINILWMRN 416
           G+  R  + + L D D+  E+  P  ++S     M    F       P +   +IL   +
Sbjct: 626 GKDERFLVKRCLSDGDFLHESCTPLSAMSSNHESMPQKGFS-----APLQHVSHIL-SES 679

Query: 417 SRALPVSTKARLKLLTSAIPKKQL 488
           S  +PVS    L   T ++P+KQL
Sbjct: 680 SSDIPVSNDVALSRCTPSMPRKQL 703


>At4g13330.1 68417.m02083 expressed protein 
          Length = 428

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 129 YQWRHLRLSCCTRGQRNRMLARCR 58
           YQWR LR +  TR    +++A CR
Sbjct: 114 YQWRSLRFNDDTRQSTVKVMAACR 137


>At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to gi:
            3172025; identical to cDNA putative aldehyde oxidase
            (AO3) mRNA, partial cds GI:2792303
          Length = 1321

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 213  LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMN 344
            L L YK GAGE     +      V  S      +S+ + F+E N
Sbjct: 942  LALFYKDGAGEPHEYTLSSMWDKVGVSSKFEERVSVVREFNESN 985


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 298 ASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTF 179
           +SL  +SP  LS+S   P P P     +S ++P+   +T+
Sbjct: 100 SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSSSSSTY 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,924,879
Number of Sequences: 28952
Number of extensions: 236291
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)