Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_P23
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 31 0.15
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.26
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 28 0.79
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 28 1.0
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 27 1.4
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 2.4
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 5.6
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 25 5.6
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 5.6
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 7.3
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 7.3
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 7.3
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe... 25 7.3
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 7.3
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 25 9.7
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 9.7
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 9.7
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 25 9.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.7
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 25 9.7
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 30.7 bits (66), Expect = 0.15
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 161 YYLHDYSLNAHYYYHHLT 214
+Y YSLN H +YHHLT
Sbjct: 258 WYSTSYSLNFHLFYHHLT 275
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 29.9 bits (64), Expect = 0.26
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 404 YDTCIQNCSLRLRRYH*VHRFHQIH*KVFPYSNV 303
YD+ I N S RRY V + QI K FPY N+
Sbjct: 59 YDSIILNDSGLERRYAFVQKLEQILKKEFPYKNI 92
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 28.3 bits (60), Expect = 0.79
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 89 ICKWKDSTRSCVIRELQSFGQYAKFHRY 6
+C+ DSTRSCVI + S Y+ Y
Sbjct: 366 VCECMDSTRSCVINDDVSSDDYSDLFSY 393
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 196 LLSSSDLQQVARRRCSSSIKRETWRMVLVRTQTTCNTLLYGK 321
L+ LQ AR C S + W+ ++ + T LLY K
Sbjct: 594 LVQRGSLQDRARIYCLSDDELSKWKTIIYKENLTAENLLYPK 635
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 112 VEYYCLALPLPKRFYVLLLT*LQFKCPLLLSSS----DLQQVARRRCSSSIKR 258
V Y C + K +Y +L + +CP++++S D++ VA S+ IKR
Sbjct: 124 VVYVCERKFIRKEYYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKR 176
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 350 ELSGNVVNEGYNFGYMYHNGIPYPVRPNHFHLDH-PEYLGE--LEKIKDYERRLRDGIEN 520
+LSGN + NF + H + Y ++D+ Y+ + LE + DYE+R++ E
Sbjct: 973 KLSGNPIISTPNF--LTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRIKVLQEL 1030
Query: 521 GYI 529
GYI
Sbjct: 1031 GYI 1033
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 28 CPKDWSSRITHDRVLSFHL 84
CPK WS I H R SF +
Sbjct: 501 CPKVWSKIINHPRFESFDI 519
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 65 EYYPSTYKWDNSVVIRSNTTVW 130
+ YP+ + W + +IRSN W
Sbjct: 205 QQYPAAFLWSLATLIRSNGIFW 226
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -1
Query: 463 QILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDVTTKF 350
Q+ W + V+M+ NW Y + ++ + F+ D T +
Sbjct: 709 QVYWRLGVQMVALNWQTYDTGLQINDAL-FIADPPTGY 745
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 239 HRLLATCCKSDDDNNSGHLNCNHV 168
H L+ K+DDD ++ HL +H+
Sbjct: 800 HALMRYLGKTDDDEDNSHLLVHHI 823
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 481 YFFKFTQILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDV 362
Y F + L + V+ +R N W T +S ++A +DV
Sbjct: 337 YTFAMLEQLLELSVKTLRQNTCWSTSWEMLSSLLAIDFDV 376
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 7.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 316 HIVTCYKLFVYEPVP 272
H+++CYK +EP P
Sbjct: 594 HVLSCYKTLFFEPPP 608
>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 373 VYDVTTKFTDFTKSIRKSFHIVTCYKLFVY 284
++D TT F D + ++SF + C+ +F +
Sbjct: 92 MHDSTTIFKDVSSRQKRSFFKLACFAVFFF 121
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 143 QSASMSYYLHDYSLNAHYYYHHLTYNKWLG 232
Q+A + Y HD +L H Y H +N W+G
Sbjct: 336 QAAGIFY--HDLALRPHAYQH---FNTWMG 360
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 365 VVNEGYNFGYMYHNGIPYPVRPNHFHLDHPEYLGELEKIKD 487
+ +EG N+ Y++HN + Y + + + D E L L K+ D
Sbjct: 50 LTHEGINYIYIHHNDV-YLLALSKMNSDAMEMLVFLRKMAD 89
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +2
Query: 17 ILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNTTVWHYHCQSASMSY 163
I H Q IG + + + S Y W ++ + N ++ C +SY
Sbjct: 1299 ISHMLQHIGQRAFQTLIHGRSPYTWKSASQVSYNASLLINWCHQKGISY 1347
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 89 ICKWKDSTRSCVIRELQSFGQYAKFHRY 6
IC W T+S E + AK+HR+
Sbjct: 207 ICLWDVQTQSFTSSETKVISPIAKYHRH 234
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 326 KVFPYSNVLQVVCVRTSTIRHVSLLIEELH 237
K F YS+ L +V S + +++LIE LH
Sbjct: 375 KSFCYSDALDMVLENGSPVLIITMLIELLH 404
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 68 YYPSTYKWDNSVVIRSNTTVWHYHCQSASMS 160
Y P+TY +++ TT ++Y+ SAS S
Sbjct: 43 YTPATYLSSVPTLLKRATTSYNYNTSSASSS 73
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 176 YSLNAHYYYHHLTYNKWLGGDV-VPLLKERRGEWYWFVHKQ 295
+SL YY + + K +G D+ +PL K EW +H Q
Sbjct: 355 FSLLLQLYYCNQSLTK-VGTDISIPLSKILGSEWLEMIHSQ 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,842
Number of Sequences: 5004
Number of extensions: 50111
Number of successful extensions: 160
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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