Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P22
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.4  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.4  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.5  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   5.5  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   7.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   9.5  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 178  MLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLD 291
            M+ +D EP +S C  LL  +     D + MVS  E  +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 421 PIKDCTSVDLQCRHHLPLSR 362
           P K+C +  L+C +H+P SR
Sbjct: 46  PCKNCKAGKLECTYHMPSSR 65


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 144 SKSYIRESXSTYAAYGLGACSFVLHPSAVQ 233
           SK  IRE      AY L ACS  L P +++
Sbjct: 44  SKEEIREQRLLQRAYALRACSNSLLPESIE 73


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 58  SPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLQARMLPTDLE 198
           SP   + RLR    Q  L A  KSS+T T+    + L+A  LP++ E
Sbjct: 356 SPSVLQERLRAAVNQQPLDA-LKSSSTQTSIPKIQKLKAAKLPSEEE 401


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 430 QARTAFTNSALLLAEQYGFDGIDLSWQLPK 519
           Q  T F  S+L +A   G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +1

Query: 118  KAKSSATMTARAISENLQARM-LPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDI 294
            K K       R +SE  + R  L   +E   + C+ L  ++   Q D Y   + N++ + 
Sbjct: 1084 KLKVEVERRRRLLSEKEERRKELAIKIEQVTNSCSDLELRTNAEQ-DFY---AKNQDFEF 1139

Query: 295  DRAHANYRAITNLKRQFPQLRVFLTVGG 378
            D        + NLK +     V LT GG
Sbjct: 1140 DEIKRYEEQLLNLKNELGWTIVSLTAGG 1167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,550
Number of Sequences: 5004
Number of extensions: 46396
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)