Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P22
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   8e-13
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              70   1e-12
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              60   1e-09
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              49   4e-06
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        38   0.007
SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)          28   5.8  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           28   7.6  
SB_27578| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
 Frame = +1

Query: 175 RMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQL 354
           + LP D++P L  CTH++Y  A I   T K+ +   N D       Y+ I +LK + P L
Sbjct: 416 KFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----RLYKEINDLKLKNPSL 468

Query: 355 RVFLTVGGDDDTEDP-QKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 516
           +  L VGG +    P   ++ ++ S   RT F +S L L+++Y FDG DL W+ P
Sbjct: 469 KTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFDGFDLDWEYP 523


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 39/125 (31%), Positives = 63/125 (50%)
 Frame = +1

Query: 184 PTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVF 363
           P D++P L  CTH+L+  A +   T+K+    EN      H  Y+ I  LK+  P+L+  
Sbjct: 42  PEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHELYQRINALKKINPKLKTQ 94

Query: 364 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRS 543
           + VGG    E    ++ ++ + + R  F  SA+     +GFDG+DL W+ P  +    +S
Sbjct: 95  IAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDGLDLDWEYPGMRGGSPKS 154

Query: 544 SIGSF 558
             G F
Sbjct: 155 DKGRF 159



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 37/125 (29%), Positives = 62/125 (49%)
 Frame = +1

Query: 184 PTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVF 363
           P D++P L  CTH+++  + +   T+ M    +N D D     Y+ I  LK+  P+L+  
Sbjct: 427 PEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL----YKRINALKKINPKLKTQ 479

Query: 364 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRS 543
           + VGG    E    ++ ++ + + R  F  SA+      GFDG+DL W+ P  +    +S
Sbjct: 480 IAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFDGLDLDWEYPGMRGGSPKS 539

Query: 544 SIGSF 558
             G F
Sbjct: 540 DKGRF 544


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
 Frame = +1

Query: 169 QARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAHANYRAITNLKRQF 345
           +A+  P D+ PA   CTHL+Y  A I Q +   M   N+    D+ +  + A   LK++ 
Sbjct: 35  RAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLYPRFNA---LKQKN 85

Query: 346 PQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 516
           P+L+  L VGG +       ++ ++++   R  F +S + +   +GFDG+DL W+ P
Sbjct: 86  PELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGFDGLDLDWEYP 142


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 33/115 (28%), Positives = 57/115 (49%)
 Frame = +1

Query: 172 ARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQ 351
           A+  P +++P+L  CTH++Y  A + AD  K+     N       A Y+ + +LK     
Sbjct: 38  AKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAAMYKKVNDLKSS-SN 89

Query: 352 LRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 516
           ++  L VGG +    P  +  ++ +   R  F + A+L    + FDG+DL W+ P
Sbjct: 90  MKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDGLDLDWEYP 142


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +1

Query: 313 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 492
           Y+   +LK + P L+  L VGG +       ++ ++ +  +R  F +S++ +  Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246

Query: 493 IDLSWQLP 516
            DL W+ P
Sbjct: 247 FDLDWEYP 254


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +1

Query: 313 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 492
           Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + FDG
Sbjct: 2   YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58

Query: 493 IDLSWQLP 516
           +DL W+ P
Sbjct: 59  LDLDWEYP 66


>SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)
          Length = 172

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -2

Query: 575 FLMLCQKDPILERIFFGFLFGNCQDRSIPSKPYCSARRRAELVKAVRACGDSNKRLYFCG 396
           +L    +D   E++F G  +G          P+  AR    +VK+V      +  +Y C 
Sbjct: 90  YLPYLDEDGTKEKVFNG-AWGRYLAFKRRIYPHVFARYIRIIVKSVFRSASIHVEIYGCV 148

Query: 395 SSVSSSPPTVKN 360
           S +SSSPP  +N
Sbjct: 149 SRLSSSPPPREN 160


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 592  PVDDKESEHREGFTALVREM 651
            P DDK +E R  FT+L++EM
Sbjct: 1066 PEDDKPAEQRMSFTSLLKEM 1085


>SB_27578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 153 YIRESXSTYAAYGLGACSFVLHPSAVQICRHPS 251
           Y+    + Y A+  GA  +V HP+ VQ   HP+
Sbjct: 116 YVTHPNAQYVAHPNGA-QYVTHPNGVQFVTHPN 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,414,038
Number of Sequences: 59808
Number of extensions: 359350
Number of successful extensions: 1142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)