Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P21
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    24   5.3  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    23   9.3  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    23   9.3  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 93  IWFFYALQGSCVTTVKWSPPWHRIMHSLL 7
           +++  AL+G C   +++SPP    ++S L
Sbjct: 185 LYYKLALEGKCNYVIRYSPPSSSKLNSKL 213


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 84  FYALQGSCVTTVKWSPPWHRIMHSLL 7
           F  + G C T + W+P   + MH ++
Sbjct: 245 FVTINGPCTTYMHWTPLKGQKMHYIV 270


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 23  MRCHGGDHLTVVTHEPCNA*KNQMIYYCVLFLAFS 127
           +RC   DH  ++T  P N  +N+     ++F +F+
Sbjct: 117 LRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFN 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 953,476
Number of Sequences: 5004
Number of extensions: 14089
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)