Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P21
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0238 - 27774546-27775418                                         28   1.1  
12_01_0761 + 6913969-6914346                                           25   8.0  

>01_06_0238 - 27774546-27775418
          Length = 290

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 86  SSTHCKVRALRPSSGHRRGIASCTRC 9
           ++T CK +A   SSG RRG   C+RC
Sbjct: 223 AATGCKRKADVKSSGARRGKRLCSRC 248


>12_01_0761 + 6913969-6914346
          Length = 125

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 95 SFGSSTHCKVRALRPSSGH 39
          S    +H ++R LRPSSGH
Sbjct: 28 SMSRLSHGQIRRLRPSSGH 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,568,303
Number of Sequences: 37544
Number of extensions: 76933
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)