Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P21
         (295 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)                     31   0.12 
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.0  
SB_39540| Best HMM Match : VWA (HMM E-Value=3.8e-20)                   27   3.5  
SB_43710| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.0  
SB_24326| Best HMM Match : DENN (HMM E-Value=0)                        25   8.0  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.0  

>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1568

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +2

Query: 2    TYNNECMMR---CHGGDHLTVVTHEPC 73
            TYNNEC+MR   C    ++TV ++ PC
Sbjct: 1086 TYNNECLMRAASCKANKNITVSSYFPC 1112


>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 8   NNECMMRCHGGDHLTVVT 61
           N++C  +CH G HL V+T
Sbjct: 313 NHKCPSQCHRGTHLIVIT 330


>SB_39540| Best HMM Match : VWA (HMM E-Value=3.8e-20)
          Length = 298

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 189 TSINIKYHKRRHIIL*FLLITEKARKRTQ**IIWFFYALQGSCVTTVKWS 40
           TS +I++H   H+I+  + I+  A       +   ++ L G C+  +K S
Sbjct: 145 TSTDIRHHHHNHVIIFVIKISSSAITLFDVSLSNLYFLLTGRCLRAIKSS 194


>SB_43710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 11 NECMMRCHGGDHLTV 55
          NEC+ RCH   HL V
Sbjct: 53 NECLRRCHNELHLAV 67


>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
          Length = 1281

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 78  ALQGSCVTTVKWSPPWHR 25
           A QG+C  +V W P +HR
Sbjct: 634 ARQGACGPSVMWLPQYHR 651


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 2    TYNNECMMR---CHGGDHLTVVTHEPCNA*KNQMIYYCVLFLAFSVISRNHNIM 154
            TY+NEC+M+   C    +L V +   C   K+ +    V+  + S+  +N N M
Sbjct: 2172 TYDNECLMQKRACENNQNLNVTSDRACPC-KDPVDLAFVVDSSGSIGRKNFNSM 2224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,833,912
Number of Sequences: 59808
Number of extensions: 100610
Number of successful extensions: 247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 326952314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)