Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P21
         (295 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine re...    26   4.1  
U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine
           receptor, class t protein69 protein.
          Length = 295

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 87  FFYALQGSCVTTVKWSPPW 31
           FF  + GS    +K+SPPW
Sbjct: 129 FFVIVSGSITQNMKFSPPW 147


>U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical
          protein C12D5.2 protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 92 FGSSTHCKVRALRPSSGHRRGIASCTRC 9
          F S  +CK+   RP+ GH   +A+C  C
Sbjct: 15 FPSPFNCKI-CNRPAHGHHCDVATCKGC 41


>Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical
           protein F33H1.5 protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +2

Query: 17  CMMRCHGGDHLTVVTHEPCNA*KNQMIYYCVLFLAFSV 130
           C      G  LT + H PC    + + ++C  F+  ++
Sbjct: 83  CQKTIFSGLSLTYIFHGPCKYVSSSLCFFCHCFVCHAM 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,304,110
Number of Sequences: 27780
Number of extensions: 81960
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)