Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P20
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    28   0.73 
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   1.7  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   5.2  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    24   9.0  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    24   9.0  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    24   9.0  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +1

Query: 13  KAGHSIDVVISGKTPEDKMAGILLEARQGDKI-VGTWTVSPDDTFSQPLNCGEPNNAVTH 189
           ++G S DVV+     +D     L +A +  K  V   ++    +  +PL  GE  +   H
Sbjct: 430 ESGASSDVVVIDDEEDDIENRPLNQALKASKAAVSNASLLQSSSLDRPL-LGEMKDK-NH 487

Query: 190 KMHAKELDRQTVSYPWT 240
           K+    LD   +SYPW+
Sbjct: 488 KVLMPSLDDPMLSYPWS 504


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 304 FWVGIESAPVKVLSH*IMSVIITYLMST 387
           F +GI++A + VL+H I +VI+T   S+
Sbjct: 321 FVIGIQNAEIPVLNHIINAVILTSACSS 348


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +1

Query: 124 VSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTI 285
           ++P D   +PL   EP   VT  +  K      VS P  AP     DV F  +I
Sbjct: 67  LNPKDELEEPLFSEEPLFPVTTSIPTK----TAVSKPKIAPTSAAKDVTFSSSI 116


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 272 SRSPLSRATPSSGSESNQP 328
           SR P  RATPS+G +   P
Sbjct: 435 SRQPTVRATPSTGKQIEPP 453


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = +1

Query: 118 WTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSY 297
           W+ S ++  ++ ++  +  +A    +  ++L   TVS PW +P +   +   ++ IV+++
Sbjct: 698 WSYSEENFLNKKMSSEQAEDAAY--VRTQQLIPPTVSPPWNSPSNNYTESDLELGIVRTF 755


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 90  SFQEDAGHFVFGCFAADNHVNGMTSF 13
           +F+E+ GH   G      HV GM S+
Sbjct: 27  TFEENRGHSFEGVTLQRRHVKGMKSY 52


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 260 ATLCSRSPLSRATPSSGSES 319
           AT  S SP++ A P SGS S
Sbjct: 633 ATSASDSPITSAQPQSGSNS 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,956
Number of Sequences: 5004
Number of extensions: 40748
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)