Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P20
         (442 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens ...    50   5e-06
AK128824-1|BAC87625.1|  706|Homo sapiens protein ( Homo sapiens ...    30   3.1  
X75953-1|CAA53566.1|  355|Homo sapiens HLA-B alpha-chain protein.      29   9.4  
AJ550735-1|CAD79566.1|  362|Homo sapiens MHC class I antigen pro...    29   9.4  
AJ295279-1|CAC17137.1|  362|Homo sapiens MHC class I antigen pro...    29   9.4  

>AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16275 fis, clone NT2RI2027157, moderately
           similar to Mouse SDR2 mRNA. ).
          Length = 626

 Score = 49.6 bits (113), Expect = 5e-06
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
 Frame = +1

Query: 13  KAGHSIDVVISGKTPEDKMAGILLEARQGDKI----VGTWTVSPDDTFSQPLNCGE-PNN 177
           + G  I+V +SG        G LLEAR  + +    +G++T+  D   SQ L C +   +
Sbjct: 59  RPGDQIEVTLSGHP----FKGFLLEARNAEDLNGPPIGSFTLI-DSEVSQLLTCEDIQGS 113

Query: 178 AVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGI 318
           AV+H+  +K+ +   +   W AP        F VT+V+ Y ++WV I
Sbjct: 114 AVSHRSASKKTE---IKVYWNAPSSAPNHTQFLVTVVEKYKIYWVKI 157


>AK128824-1|BAC87625.1|  706|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46160 fis, clone TESTI4002141. ).
          Length = 706

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 127 LRSKCRRSCHPDELPGGCRPFCLRVFC 47
           LR+     C P +  GGC   C+RV C
Sbjct: 241 LRASVSECCVPGDAQGGCAGICVRVLC 267


>X75953-1|CAA53566.1|  355|Homo sapiens HLA-B alpha-chain protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 255 RRRRCVQGHHCQELRRLLGRNRISPRKGSKSLNHVSHHHLLDVNINL 395
           +RR  ++G   + LRR L   + + ++      HV+HH + D  + L
Sbjct: 179 QRRAYLEGTCVESLRRYLENGKETLQRADPPKTHVTHHPISDHEVTL 225


>AJ550735-1|CAD79566.1|  362|Homo sapiens MHC class I antigen
           protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 255 RRRRCVQGHHCQELRRLLGRNRISPRKGSKSLNHVSHHHLLDVNINL 395
           +RR  ++G   + LRR L   + + ++      HV+HH + D  + L
Sbjct: 179 QRRAYLEGTCVESLRRYLENGKETLQRADPPKTHVTHHPISDHEVTL 225


>AJ295279-1|CAC17137.1|  362|Homo sapiens MHC class I antigen
           protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 261 RRCVQGHHCQELRRLLGRNRISPRKGSKSLNHVSHHHLLD 380
           R C++G   + LRR L   + + ++      HV+HH + D
Sbjct: 181 RACLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISD 220


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,641,262
Number of Sequences: 237096
Number of extensions: 1599858
Number of successful extensions: 4673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4673
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)