Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P20
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 283 IVKSYAVFWVGIESAPVKV 339
           ++ S+  FW+  E+AP +V
Sbjct: 259 VIMSWVSFWIKPEAAPARV 277


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 23  IPLTWLSAAKHPKTKWP 73
           IP+T  +  KH KTK P
Sbjct: 210 IPVTLTTVPKHSKTKSP 226


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 283 IVKSYAVFWVGIESAPVKVLSH*IMSVIITYLMSTLICITN 405
           ++ S+  FW+   + P +V     + V     M+TL+  TN
Sbjct: 235 VIISWVSFWLNRNATPARV----ALGVTTVLTMTTLMSSTN 271


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 283 IVKSYAVFWVGIESAPVKVLSH*IMSVIITYLMSTLICITN 405
           ++ S+  FW+   + P +V     + V     M+TL+  TN
Sbjct: 235 VIISWVSFWLNRNATPARV----ALGVTTVLTMTTLMSSTN 271


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 333 KGSKSLNHVSHHHLLDVNINLYY 401
           K ++S+NH+  HH  D  ++  Y
Sbjct: 756 KKARSVNHLLTHHEYDYELSRGY 778



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 31  DVVISGKTPEDKMAGILLEARQGDKIVGTWTVS 129
           D+ ISGK  + +M   L+     D+ V TW V+
Sbjct: 99  DLPISGKPFQIRMKHGLIRDLIVDRDVPTWEVN 131


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 283 IVKSYAVFWVGIESAPVKVLSH*IMSVIITYLMSTLICITN 405
           ++ S+  FW+   + P +V     + V     M+TL+  TN
Sbjct: 174 VIISWVSFWLNRNATPARV----ALGVTTVLTMTTLMSSTN 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,310
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)