Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_P20
(442 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative... 29 1.1
At5g50200.3 68418.m06216 expressed protein similar to unknown pr... 28 2.4
At5g50200.2 68418.m06218 expressed protein similar to unknown pr... 28 2.4
At5g50200.1 68418.m06217 expressed protein similar to unknown pr... 28 2.4
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil... 27 4.2
At4g04920.1 68417.m00715 expressed protein 27 4.2
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ... 27 4.2
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ... 27 4.2
At1g18550.1 68414.m02314 kinesin motor protein-related contains ... 27 7.4
At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CH... 26 9.8
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni... 26 9.8
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 26 9.8
At3g30240.1 68416.m03821 hypothetical protein 26 9.8
>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
(PDF2.1) plant defensin protein family member, personal
communication, Bart Thomma
(Bart.Thomma@agr.kuleuven.ac.be); contains a
gamma-thionin family signature (PDOC00725)
Length = 77
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -1
Query: 121 SKCRRSCHPDELPGG-CRPFCLRVFC 47
+ C CH + PGG CR F R FC
Sbjct: 48 TNCENVCHNEGFPGGDCRGFRRRCFC 73
>At5g50200.3 68418.m06216 expressed protein similar to unknown
protein (pir||T05562) isoform contains a non-consensus
AT acceptor splice site at intron 1
Length = 210
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 187 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 327
HK+ AK D+ S WT +D+ F V++YAV +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152
>At5g50200.2 68418.m06218 expressed protein similar to unknown
protein (pir||T05562) isoform contains a non-consensus
AT acceptor splice site at intron 1
Length = 210
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 187 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 327
HK+ AK D+ S WT +D+ F V++YAV +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152
>At5g50200.1 68418.m06217 expressed protein similar to unknown
protein (pir||T05562) isoform contains a non-consensus
AT acceptor splice site at intron 1
Length = 210
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 187 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 327
HK+ AK D+ S WT +D+ F V++YAV +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152
>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
to SP|Q12627 from Kluyveromyces lactis and SP|P32891
from Saccharomyces cerevisiae; contains Pfam FAD linked
oxidases, C-terminal domain PF02913, Pfam FAD binding
domain PF01565
Length = 567
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 158 LRGCEKV-SSGLTVQVPTILSP*RASRRMPAILSSGVLPL 42
LR C ++ S+ + T+LSP + RR+P SS + PL
Sbjct: 17 LRPCRQLHSTPKSTGDVTVLSPVKGRRRLPTCWSSSLFPL 56
>At4g04920.1 68417.m00715 expressed protein
Length = 1250
Score = 27.5 bits (58), Expect = 4.2
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Frame = +1
Query: 7 SVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVT 186
++++ I VV+ K E + G + + VSP F L +PN+ +
Sbjct: 43 TIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFCVKLK--QPNSNLL 100
Query: 187 HKMHAKELDRQTVSYPWTAPKD---LEGDVVFKVTIVKSYAVFWVGI 318
HKM EL R + W + + ++ K+ FW+ I
Sbjct: 101 HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPI 147
>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203;
contains Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 321 ISPRKGSKSLNHVS-HHHLLDVNINLYYKHYK 413
+ P + +K L V HHHLL + + L+Y K
Sbjct: 800 LEPHQSTKRLIQVRFHHHLLPMRLTLHYNEKK 831
>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203;
contains Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 321 ISPRKGSKSLNHVS-HHHLLDVNINLYYKHYK 413
+ P + +K L V HHHLL + + L+Y K
Sbjct: 800 LEPHQSTKRLIQVRFHHHLLPMRLTLHYNEKK 831
>At1g18550.1 68414.m02314 kinesin motor protein-related contains
similarity to kinesin-related protein GI:4493964 from
[Plasmodium falciparum]
Length = 799
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 285 CQELRRLLGRNRISPRKGSKSLNHVSH 365
C+E RR++ R + P++ K L SH
Sbjct: 642 CKETRRIVTRGSLRPKEKEKELKSPSH 668
>At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CHX3)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 822
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 262 DVVFKVTIVKSYAVFW----VGIESAPVKVLSH*IMSV-IITYLMSTLIC 396
++VF +T SY +FW V +++ ++ +++ + + L+STL+C
Sbjct: 116 EIVFSLTAACSYMMFWFLMGVKMDTGLIRTTGRKAITIGLSSVLLSTLVC 165
>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
subunit-related / RAB geranylgeranyltransferase alpha
subunit-related low similarity to SP|Q08602 [Rattus
norvegicus]
Length = 683
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 306 LGRNRISPRKGSKSLNHVSHHHLLDVNINLYYKHYKYTT 422
L NRI SL HV +LDV+ N KH TT
Sbjct: 567 LSHNRIRSFSALDSLRHVKQLKVLDVSHNHIGKHSVDTT 605
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = -1
Query: 214 CLILWHASCGSRRYLVHHS*GVARRYHRGLRSKCRRSCHPDELPGGCRPFCLR 56
C + +H C V+H V YH K PD G CR C R
Sbjct: 155 CDLTFHVDCVWHPSEVYHPLEVNHSYHPSHPLKLHTGQRPDYSDGACR-LCAR 206
>At3g30240.1 68416.m03821 hypothetical protein
Length = 189
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 207 FFGMHLVGHGVIWFTTVEG 151
FF +LVGH + FT+VEG
Sbjct: 84 FFAENLVGHALDSFTSVEG 102
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,323,887
Number of Sequences: 28952
Number of extensions: 225880
Number of successful extensions: 553
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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