Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_P19
(524 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica... 138 3e-33
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (... 138 3e-33
At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identic... 114 4e-26
At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase (S... 91 3e-19
At3g48170.1 68416.m05254 betaine-aldehyde dehydrogenase, putativ... 81 4e-16
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ... 75 4e-14
At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogena... 58 5e-09
At2g24270.2 68415.m02900 NADP-dependent glyceraldehyde-3-phospha... 44 6e-05
At2g24270.1 68415.m02899 NADP-dependent glyceraldehyde-3-phospha... 44 6e-05
At3g66658.2 68416.m00781 betaine-aldehyde dehydrogenase, putativ... 33 0.16
At3g66658.1 68416.m00782 betaine-aldehyde dehydrogenase, putativ... 33 0.16
At5g18470.1 68418.m02175 curculin-like (mannose-binding) lectin ... 29 1.9
At3g50300.1 68416.m05501 transferase family protein similar to a... 28 3.3
At5g38130.1 68418.m04594 transferase family protein similar to a... 28 4.4
At3g25010.1 68416.m03126 disease resistance family protein conta... 27 5.8
At3g60960.1 68416.m06821 pentatricopeptide (PPR) repeat-containi... 27 7.7
At2g28600.1 68415.m03476 expressed protein 27 7.7
At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)... 27 7.7
At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)... 27 7.7
>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
to aldehyde dehydrogenase [Arabidopsis thaliana]
GI:8574427; similar to mitochondrial aldehyde
dehydrogenase [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; identical to cDNA aldehyde
dehydrogenase AtALDH2a GI:20530140
Length = 538
Score = 138 bits (333), Expect = 3e-33
Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Frame = +3
Query: 48 VDIKYTKLFINNEWVDAVSKKTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYS 227
V + +T+L IN +VD+ S KTFPT++P+ VI VAEG F
Sbjct: 53 VQVSHTQLLINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDE-G 111
Query: 228 EWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQA-EQEVLWASGIVRYYAG 404
W + A +R +L + A L+E+ ++ LA LET DNGKP +Q+ E+ + + RYYAG
Sbjct: 112 PWPKMSAYERSRVLLRFADLVEKHSEELASLETWDNGKPYQQSLTAEIPMFARLFRYYAG 171
Query: 405 KADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPM 524
ADKI G TIPADG TL EP+GV GQI+PWN+P+ M
Sbjct: 172 WADKIHGLTIPADGNYQVHTLHEPIGVAGQIIPWNFPLLM 211
>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
(ALDH3) nearly identical to mitochondrial aldehyde
dehydrogenase ALDH3 [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein
Length = 534
Score = 138 bits (333), Expect = 3e-33
Identities = 71/160 (44%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Frame = +3
Query: 48 VDIKYTKLFINNEWVDAVSKKTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYS 227
V +++T+L I +VDAVS KTFPT++P++ VI QV+EG F
Sbjct: 49 VKVEHTQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDE-G 107
Query: 228 EWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYYAG 404
W + A +R +LF+ A L+E+ +A LET DNGKP +Q+ Q EV + + RYYAG
Sbjct: 108 PWPKMTAYERSKILFRFADLIEKHNDEIAALETWDNGKPYEQSAQIEVPMLARVFRYYAG 167
Query: 405 KADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPM 524
ADKI G T+P DG TL EP+GV GQI+PWN+P+ M
Sbjct: 168 WADKIHGMTMPGDGPHHVQTLHEPIGVAGQIIPWNFPLLM 207
>At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identical
to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana]
gi|20530143|gb|AAM27004
Length = 501
Score = 114 bits (274), Expect = 4e-26
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Frame = +3
Query: 51 DIKYTKLFINNEWVDAVSKKTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYSE 230
+IK+TKLFIN +++DA S KTF TI+P++ VI +AEG F +
Sbjct: 16 EIKFTKLFINGQFIDAASGKTFETIDPRNGEVIATIAEGDKEDVDLAVNAARYAFD-HGP 74
Query: 231 WRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAE-QEVLWASGIVRYYAGK 407
W + +R L+ K A L+E + + LA+L+ +D GK + + ++ +G RY AG
Sbjct: 75 WPRMTGFERAKLINKFADLIEENIEELAKLDAVDGGKLFQLGKYADIPATAGHFRYNAGA 134
Query: 408 ADKILGNTIPADGEVL-TFTLKEPVGVCGQILPWNYP 515
ADKI G T+ + L +TLKEP+GV G I+PWN+P
Sbjct: 135 ADKIHGETLKMTRQSLFGYTLKEPIGVVGNIIPWNFP 171
>At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase
(SSADH1) similar to succinate-semialdehyde dehydrogenase
[NADP+] (SSDH) [Escherichia coli] SWISS-PROT:P25526;
identical to succinic semialdehyde dehydrogenase mRNA,
nuclear gene encoding mitochondrial protein GI:6684441;
contains TIGRfam profile TIGR01780:succinic semialdehyde
dehydrogenase; contains Pfam profile PF00171: aldehyde
dehydrogenase (NAD) family protein
Length = 528
Score = 91.5 bits (217), Expect = 3e-19
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Frame = +3
Query: 63 TKLFINNEWVDAVSKKTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYSEWRLL 242
T+ I +W+D+ KT NP +I VA + ++ W L
Sbjct: 53 TQGLIGGKWLDSYDNKTIKVNNPATGEIIADVA---CMGTKETNDAIASSYEAFTSWSRL 109
Query: 243 DASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKADKIL 422
A +R +L + L+ + L +L TL+ GKP+K+A EV + + + YYA +A ++
Sbjct: 110 TAGERSKVLRRWYDLLIAHKEELGQLITLEQGKPLKEAIGEVAYGASFIEYYAEEAKRVY 169
Query: 423 GNTIPAD-GEVLTFTLKEPVGVCGQILPWNYPIPM 524
G+ IP + + LK+PVGV G I PWN+P+ M
Sbjct: 170 GDIIPPNLSDRRLLVLKQPVGVVGAITPWNFPLAM 204
>At3g48170.1 68416.m05254 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Arabidopsis thaliana]
SWISS-PROT:Q9S795
Length = 503
Score = 81.0 bits (191), Expect = 4e-16
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Frame = +3
Query: 48 VDIKYTKLFINNEWVDAVSKKTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYS 227
+ + +LFI +W + V +KT P +NP E +I + F R +
Sbjct: 3 ITVPRRQLFIGGQWTEPVLRKTLPVVNPATEDIIGYIPAATSEDVELAVEAARKAFTRNN 62
Query: 228 --EWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYA 401
+W + R L +A + LA LE +D GKP+ +A ++ +G YYA
Sbjct: 63 GKDWARATGAVRAKYLRAIAAKVIERKSELANLEAIDCGKPLDEAAWDMDDVAGCFEYYA 122
Query: 402 GKADKILGN-----TIPADGEVLTFTLKEPVGVCGQILPWNYPIPM 524
A+ + ++P D + LKEP+GV G I PWNYP+ M
Sbjct: 123 DLAEGLDAKQKTPLSLPMD-TFKGYILKEPIGVVGMITPWNYPLLM 167
>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
identical to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Arabidopsis thaliana]
SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
dehydrogenase [Amaranthus hypochondriacus] GI:2388710
Length = 501
Score = 74.5 bits (175), Expect = 4e-14
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Frame = +3
Query: 66 KLFINNEWVDAVSKKTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYS--EWRL 239
+LFI+ EW + + KK P +NP E VI + R +W
Sbjct: 9 QLFIDGEWREPILKKRIPIVNPATEEVIGDIPAATTEDVDVAVNAARRALSRNKGKDWAK 68
Query: 240 LDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKADKI 419
+ R L +A + LA+LE LD GKP+ +A ++ +G +YA A+ +
Sbjct: 69 APGAVRAKYLRAIAAKVNERKTDLAKLEALDCGKPLDEAVWDMDDVAGCFEFYADLAEGL 128
Query: 420 LGN-----TIPADGEVLTFTLKEPVGVCGQILPWNYPIPM 524
++P + ++ LK+P+GV G I PWNYP+ M
Sbjct: 129 DAKQKAPVSLPMES-FKSYVLKQPLGVVGLITPWNYPLLM 167
>At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogenase,
putative similar to methylmalonate-semialdehyde
dehydrogenase [acylating], mitochondrial precursor
(MMSDH) [Rattus norvegicus] SWISS-PROT:Q02253
Length = 607
Score = 57.6 bits (133), Expect = 5e-09
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Frame = +3
Query: 75 INNEWVDAVSKKTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYSEWRLLDASQ 254
I +V++ S INP + V+ +V F WR +
Sbjct: 118 IGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFPL---WRNTPITT 174
Query: 255 RGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKADKILGNTI 434
R ++ K L+ ++ LA T + GK +K + ++ +V + G A +G +
Sbjct: 175 RQRVMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHACGMATLQMGEYL 234
Query: 435 P-ADGEVLTFTLKEPVGVCGQILPWNYP 515
P V T++++EP+GVC I P+N+P
Sbjct: 235 PNVSNGVDTYSIREPLGVCAGICPFNFP 262
>At2g24270.2 68415.m02900 NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase, putative similar to NADP-dependent
glyceraldehyde-3-phosphate dehydrogenase
(NON-phosphorylating glyceraldehyde 3-phosphate;
glyceraldehyde-3-phosphate dehydrogenase [NADP+])
[Nicotiana plumbaginifolia] SWISS-PROT:P93338
Length = 496
Score = 44.0 bits (99), Expect = 6e-05
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 8/165 (4%)
Frame = +3
Query: 48 VDIKYTKLFINNEWVDAVSKKTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYS 227
+D + K + + EW + S K+ +NP +V
Sbjct: 11 LDGEVYKYYADGEWKTSSSGKSVAIMNPATRKTQYKVQACTQEEVNAVMELAKSA---QK 67
Query: 228 EWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGK 407
W +R LL K A +++ + +AE + KP K + EV+ + ++ Y A +
Sbjct: 68 SWAKTPLWKRAELLHKAAAILKDNKAPMAESLVKEIAKPAKDSVTEVVRSGDLISYCAEE 127
Query: 408 ADKILG-------NTIPA-DGEVLTFTLKEPVGVCGQILPWNYPI 518
+ILG ++ P D T K P+GV I P+NYP+
Sbjct: 128 GVRILGEGKFLLSDSFPGNDRTKYCLTSKIPLGVVLAIPPFNYPV 172
>At2g24270.1 68415.m02899 NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase, putative similar to NADP-dependent
glyceraldehyde-3-phosphate dehydrogenase
(NON-phosphorylating glyceraldehyde 3-phosphate;
glyceraldehyde-3-phosphate dehydrogenase [NADP+])
[Nicotiana plumbaginifolia] SWISS-PROT:P93338
Length = 496
Score = 44.0 bits (99), Expect = 6e-05
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 8/165 (4%)
Frame = +3
Query: 48 VDIKYTKLFINNEWVDAVSKKTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYS 227
+D + K + + EW + S K+ +NP +V
Sbjct: 11 LDGEVYKYYADGEWKTSSSGKSVAIMNPATRKTQYKVQACTQEEVNAVMELAKSA---QK 67
Query: 228 EWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGK 407
W +R LL K A +++ + +AE + KP K + EV+ + ++ Y A +
Sbjct: 68 SWAKTPLWKRAELLHKAAAILKDNKAPMAESLVKEIAKPAKDSVTEVVRSGDLISYCAEE 127
Query: 408 ADKILG-------NTIPA-DGEVLTFTLKEPVGVCGQILPWNYPI 518
+ILG ++ P D T K P+GV I P+NYP+
Sbjct: 128 GVRILGEGKFLLSDSFPGNDRTKYCLTSKIPLGVVLAIPPFNYPV 172
>At3g66658.2 68416.m00781 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Spinacia oleracea] SWISS-PROT:P17202;
contains non-consensus splice site (GC) at intron 13
Length = 596
Score = 32.7 bits (71), Expect = 0.16
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +3
Query: 252 QRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYYAGKADKILGN 428
+R L L ++E + + E+ + D GK + A E++ + + + ++ L
Sbjct: 110 RRQFLRILLKYIIEHQ-ELICEVSSRDTGKTMVDASLGEIMTTCEKITWLLSEGERWLKP 168
Query: 429 TIPADGEVLTFTLKE----PVGVCGQILPWNYP 515
+ G + + P+GV G I+PWNYP
Sbjct: 169 ESRSSGRAMLHKVSRVEFHPLGVIGAIVPWNYP 201
>At3g66658.1 68416.m00782 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Spinacia oleracea] SWISS-PROT:P17202;
contains non-consensus splice site (GC) at intron 13
Length = 554
Score = 32.7 bits (71), Expect = 0.16
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +3
Query: 252 QRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYYAGKADKILGN 428
+R L L ++E + + E+ + D GK + A E++ + + + ++ L
Sbjct: 110 RRQFLRILLKYIIEHQ-ELICEVSSRDTGKTMVDASLGEIMTTCEKITWLLSEGERWLKP 168
Query: 429 TIPADGEVLTFTLKE----PVGVCGQILPWNYP 515
+ G + + P+GV G I+PWNYP
Sbjct: 169 ESRSSGRAMLHKVSRVEFHPLGVIGAIVPWNYP 201
>At5g18470.1 68418.m02175 curculin-like (mannose-binding) lectin
family protein contains Pfam profile: PF01453 lectin
(probable mannose binding)
Length = 413
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 224 LRMASPGCFTKRPTALQTGHPHGERRKIFSRTRNTG 331
L+ +S C T++PTA + G + E R+ + NTG
Sbjct: 313 LKNSSAICITEKPTACRKGSEYFEPRRGYMMENNTG 348
>At3g50300.1 68416.m05501 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 448
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 173 LVTLSNLDDDTLILRIDCREGFLADSVHPFVVNEQLSILDVYFNH 39
LV ++N +D+T+ IDC +G VH + E +S+ D+ H
Sbjct: 77 LVKVNNHEDNTVSFYIDCDDGRGVKFVH--AIAESVSVSDILQPH 119
>At5g38130.1 68418.m04594 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 462
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 173 LVTLSNLDDDTLILRIDCREGFLADSVHPFVVNEQLSILDVYFNH 39
LV ++N +DDT+ IDC +G A VH E +++ DV +H
Sbjct: 97 LVKVNNHEDDTVSFYIDC-DGLGAKFVH--AKAESITVNDVLQSH 138
>At3g25010.1 68416.m03126 disease resistance family protein contains
leucine rich-repeat (LRR) domains (23 copies)
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 881
Score = 27.5 bits (58), Expect = 5.8
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -1
Query: 218 MESLLCSSNG*VDVSLVTLSNLDDDTLILRIDCREGFLADSVHPFVVN-EQLSILDVYFN 42
+E L SS+G + + SNL +++ +D + L S+ FV N +L +LDV +N
Sbjct: 125 LEVLFLSSSGFLGQVPFSFSNL---SMLSALDLSDNELTGSLS-FVRNLRKLRVLDVSYN 180
Query: 41 HF 36
HF
Sbjct: 181 HF 182
>At3g60960.1 68416.m06821 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 403
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 176 SLVTLSNLDDDTLILRIDCREGFLADSVHPFVVNEQLSIL 57
+++ +SNLD+ + + R+ GFL D F+ N + +
Sbjct: 59 AMIEMSNLDEASKLSRLAVLNGFLVDRDTVFICNSVIGAM 98
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 27.1 bits (57), Expect = 7.7
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = -1
Query: 338 SVVQCFEFC*IFCVSLHEGGQFEEQ*ASL*SIQETPFGVTMESLL--CSSNG*VDVSLVT 165
SV + + I VSLH+G + Q + L S++ T E LL + G VD+S V+
Sbjct: 214 SVCKALKGIGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLLEIVTLKG-VDISNVS 272
Query: 164 LSNLDD 147
L +D+
Sbjct: 273 LLVIDE 278
>At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)
similar to aldehyde dehydrogenase ALDH [Craterostigma
plantagineum] gi|17065918|emb|CAC84900
Length = 484
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 429 TIPADGEVLTFTLKEPVGVCGQILPWNYP 515
T PA E+++ EP+GV I WNYP
Sbjct: 101 TFPASAEIVS----EPLGVVLVISAWNYP 125
>At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)
similar to aldehyde dehydrogenase ALDH [Craterostigma
plantagineum] gi|17065918|emb|CAC84900
Length = 484
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 429 TIPADGEVLTFTLKEPVGVCGQILPWNYP 515
T PA E+++ EP+GV I WNYP
Sbjct: 101 TFPASAEIVS----EPLGVVLVISAWNYP 125
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,895,914
Number of Sequences: 28952
Number of extensions: 207879
Number of successful extensions: 554
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -