Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P17
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    28   0.37 
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   2.6  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   3.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    24   5.9  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    24   5.9  

>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 227 LARSGMR*IWYSNCTSESAGCGSFFIYFDKCLLEGFRHYYTVT 99
           L R  MR I   N  S++A C   +  FD   LEG   Y  V+
Sbjct: 597 LVRMPMRTISEGNLDSDAAKCRIMYTKFDSICLEGIVGYQRVS 639


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 197 YSNCTSESAGCGSFFIYFDKCLLEGFRHYYTVT 99
           Y NC S+    GS F ++ K       HY + T
Sbjct: 571 YLNCNSKPMSLGSMFEHYRKLARRLISHYLSKT 603


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 155 FIYFDKCLLEGFRHYYTV 102
           F +  KCL E FR++Y +
Sbjct: 102 FTFLPKCLYEQFRYFYNM 119


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 152 IYFDKCLLEGFRHYYTVTLDDVWCRLVEYFRNSKLGHQRFKV 27
           IY+ + +     H+    +DDV   LV    ++ LGH   K+
Sbjct: 385 IYYSERIRLEIDHHVQEIIDDVVSNLVTNHSSTSLGHLESKL 426


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 188 SCCT--IFIAFQTSPAFGFQS*SSVRLFHFI*RSNNLCWY 301
           SC T  IF A   S  + +Q  +  +LF F     N+C Y
Sbjct: 74  SCATQDIFYALSDSQVYVYQISTFKKLFSFGAHCQNMCLY 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,788
Number of Sequences: 5004
Number of extensions: 22985
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)