Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_P17
(310 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0044 - 25150322-25151260 40 3e-04
01_01_1152 + 9170628-9171899 39 0.001
11_02_0012 - 7346282-7347136,7347234-7347593 38 0.002
11_02_0011 - 7337618-7338496,7338596-7338991 38 0.002
01_06_0824 - 32243495-32244319,32244449-32244859 36 0.005
11_01_0771 + 6453130-6454488 36 0.009
11_01_0767 + 6438648-6438809,6439146-6440000 30 0.32
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 27 4.0
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 27 4.0
12_02_0706 + 22319293-22319803,22321625-22321766,22322223-223234... 26 6.9
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373... 26 6.9
03_05_0304 - 22950314-22950408,22950903-22951167,22951256-22951447 26 6.9
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 25 9.2
>05_06_0044 - 25150322-25151260
Length = 312
Score = 40.3 bits (90), Expect = 3e-04
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Frame = +3
Query: 3 KFEIKSKLDLKPLMPKFGVSKIFNEPAPNIVKG------DSVVVSEAFQEAFIKVDEEXX 164
KFE+ K++ L+ +FG+ F A N G VS + F+ V+EE
Sbjct: 200 KFEVSLKVEASRLLREFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNVNEEGT 259
Query: 165 XXXXXXXXXXXPYSSHSRPRQPLV-FKVDHPFAYFILYE--DQIIFAG 299
+ + P +V F DHPF +FI+ E ++FAG
Sbjct: 260 VAAAGTVGEIMGF---AMPDDQIVDFVADHPFLFFIVEEVSGLVVFAG 304
>01_01_1152 + 9170628-9171899
Length = 423
Score = 38.7 bits (86), Expect = 0.001
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = +3
Query: 3 KFEIKSKLDLKPLMPKFGVSKIF--NEPAPNIVKGDSVVVSEAFQEAFIKVDEEXXXXXX 176
KF+ K + K M K GV++ F + + + GD + ++E + +A I+VDE
Sbjct: 316 KFKFSFKFEAKSDMRKLGVTRAFAGGDFSGMVTGGDGLFIAEVYHQATIEVDELGTVAAA 375
Query: 177 XXXXXXXPYSSHSRPRQPLVFKVDHPFAYFILYE--DQIIFAG 299
S S P P+ F D PF + ++ E ++F G
Sbjct: 376 STAVVMMQKGS-SLP--PVDFVADRPFLFAVVEELTGAVLFLG 415
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 37.9 bits (84), Expect = 0.002
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +3
Query: 3 KFEIKSKLDLKPLMPKFGVSKIFNEPAPNI---VKGDSVVVSEAFQEAFIKVDEEXXXXX 173
+F++ ++ ++ G+ F+ ++ + G+ VVV + A ++V+EE
Sbjct: 294 RFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGMIDGELVVVEKVMHRAVVEVNEEGTEAA 353
Query: 174 XXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFILYE--DQIIFAG 299
P+ F DHPFA+F++ E D ++FAG
Sbjct: 354 AATACTMKFLCLTLT--SPVDFVADHPFAFFVVEEKSDAVLFAG 395
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 96 KGDSVVVSEAFQEAFIKVDEEXXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFILY 275
+G +VV E F A ++V+EE S S P F DHPFA+F++
Sbjct: 349 RGGGLVVEEVFHRAVVEVNEEGTEAAASTACTIRLLSM-SYPED---FVADHPFAFFVVE 404
Query: 276 EDQ--IIFAG 299
E ++FAG
Sbjct: 405 ETSGAVLFAG 414
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 96 KGDSVVVSEAFQEAFIKVDEE-XXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFIL 272
+ + +VVS + E+F++V+EE ++ S P + F DHPF F++
Sbjct: 332 EAEKIVVSAVYHESFVEVNEEGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPF-MFLI 390
Query: 273 YED---QIIFAGTYT 308
ED ++FAG T
Sbjct: 391 KEDLTGVVVFAGQVT 405
>11_01_0771 + 6453130-6454488
Length = 452
Score = 35.5 bits (78), Expect = 0.009
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 99 GDSVVVSEAFQEAFIKVDEEXXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFILYE 278
G + V + +A I+V+EE P P P+ F +HPFAYFI+ E
Sbjct: 379 GWPLFVGDIQHKAVIEVNEEGTVAAAATMTRMLPSGV---PPPPVDFVAEHPFAYFIVEE 435
Query: 279 --DQIIFAG 299
++FAG
Sbjct: 436 MSSAVVFAG 444
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 30.3 bits (65), Expect = 0.32
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Frame = +3
Query: 105 SVVVSEAFQEAFIKVDEEXXXXXXXXXXXXXP-----YSSHSRPRQPLV-FKVDHPFAYF 266
++ VS + ++V+EE Y P LV F DHPFA+F
Sbjct: 257 AMFVSSVIHKVVVEVNEEGSEAAAYTEESDDDLGCSLYDDDYTPPPKLVDFVADHPFAFF 316
Query: 267 ILYE--DQIIFAG 299
I+ E I+FAG
Sbjct: 317 IVEERSQAIVFAG 329
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 169 PALSLVQLLYHIHR---IPDLASLWFSKLIIRSLISFYMKIK 285
P + L L YH+ + LW +I SL SFY IK
Sbjct: 236 PVIFLSALKYHVFPDKWVSFYRPLWLMSSVINSLYSFYWDIK 277
>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -3
Query: 143 DKCLLEGFRHYYTVTLDDVWCRLVE 69
++C L+ FRH Y + + W + V+
Sbjct: 1406 NRCHLQAFRHLYVIATEPRWIQTVD 1430
>12_02_0706 +
22319293-22319803,22321625-22321766,22322223-22323451,
22323471-22323916,22324001-22324510
Length = 945
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 149 YFDKCLLEGFRHYYTVTLDDVWCRLV 72
+F + ++EG R + D+ WCR++
Sbjct: 543 HFQELMVEGLRLLAKLVSDEEWCRVI 568
>11_01_0485 +
3728686-3728863,3729933-3730095,3730508-3730549,
3730833-3730927,3731273-3731334,3731416-3731507,
3731587-3731722,3731818-3731904,3732430-3732519,
3732969-3733071,3733616-3733716,3733837-3733971,
3734006-3734093,3734484-3734544,3734626-3734689,
3735219-3735347
Length = 541
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 263 ISERMINFENQRLARSGMR*IWYSNCTSESAGCGSFFIYFDKCLLEGFR 117
ISE ++ F+N+ L RS ++ TS + C + F LL FR
Sbjct: 445 ISEWIVKFDNKELDRSRLQLNHVDAITSRTYVCNQCYSKFIDFLLYWFR 493
>03_05_0304 - 22950314-22950408,22950903-22951167,22951256-22951447
Length = 183
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = -3
Query: 200 WYSNCTSESAGCGSFFIYFDKCLLEGFRHYYTVTLDDVW 84
WY C + +G +F + D L R D+VW
Sbjct: 56 WYFKCVNARSGGCDYFAWVDGPLSSFLREVLNDLRDEVW 94
>02_05_0070 -
25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -1
Query: 142 INASWKASDTTTLSPLTMFGAGSLNIFETPNLGIKG 35
+ A+WK +D + S + +FG G++ + ++G
Sbjct: 798 LGAAWKVADISKGSSVVIFGLGTVGLSVAQGAKLRG 833
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,013,696
Number of Sequences: 37544
Number of extensions: 137645
Number of successful extensions: 340
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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