Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_P17
(310 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 45 1e-05
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 38 0.002
SB_51995| Best HMM Match : Histone (HMM E-Value=3.7e-15) 29 0.58
SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_45255| Best HMM Match : Ribosomal_L36 (HMM E-Value=4.2) 27 4.1
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 26 5.4
SB_44323| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_27720| Best HMM Match : MOZ_SAS (HMM E-Value=8.1e-13) 25 9.5
SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35) 25 9.5
SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +3
Query: 3 KFEIKSKLDLKPLMPKFGVSKIFNEPAPNI----VKGDSVVVSEAFQEAFIKVDEEXXXX 170
KF++ S+ L + + G+ K+F++ A + + + + VS +AF++V+EE
Sbjct: 236 KFKMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVNEEGTEA 295
Query: 171 XXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFI 269
+ R +PLVF+ DHPF + I
Sbjct: 296 AAATAAIMMMRCAIMR--EPLVFRADHPFLFLI 326
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 37.9 bits (84), Expect = 0.002
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +3
Query: 3 KFEIKSKLDLKPLMPKFGVSKIFNEPAPNI--VKGDSVVVSEAFQEAFIKVDEEXXXXXX 176
KF + + L + G S +F+ ++ + +VVSE +AF++V+EE
Sbjct: 273 KFTLTQEFSLGETLKGMGASDLFSPGKADLSGISAAPLVVSEVVHKAFVEVNEEGTIAAA 332
Query: 177 XXXXXXXPYSSHSRPRQPLVFKVDHPFAYFILYED--QIIFAG 299
S P VF +HPF + I + D ++F G
Sbjct: 333 ATGVGIMLMSMPMNP----VFYANHPFLFLIRHNDTGAVLFMG 371
>SB_51995| Best HMM Match : Histone (HMM E-Value=3.7e-15)
Length = 138
Score = 29.5 bits (63), Expect = 0.58
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 80 RLVEYFRNSKLGHQRFKVQFAFYFK 6
RL Y + S+ +RF++QFA+Y++
Sbjct: 76 RLAHYNKKSQSARERFRLQFAYYYQ 100
>SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -3
Query: 179 ESAGC---GSFFIYFDKCLLEGFRHYYTVTLDDVWCRLV-EYF 63
E GC G IY K + +GF + + + +W ++V EYF
Sbjct: 2 EKTGCRYAGGISIYISKAIADGFTYMPSKNNNIIWLKIVKEYF 44
>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1273
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 24 LDLKPLMPKFGVSKIFNEPAPNIVKGDSVVVSEAFQEAF 140
+D KP + F + F+E P++ + +S V+E F++AF
Sbjct: 636 VDSKPRVA-FDENVTFDERKPSVTQSESSAVTEDFEDAF 673
>SB_45255| Best HMM Match : Ribosomal_L36 (HMM E-Value=4.2)
Length = 150
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 57 VSKIFNEPAPNIVKGDSVVVSEAFQEAFIKVDEE 158
+ K FN ++ VV+ +AF E F DEE
Sbjct: 112 IKKSFNAALKHVKPDAVVVLGDAFNEGFTATDEE 145
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 121 KPSRRHLSK*MKKEPQPA 174
+PSRR LSK + K P PA
Sbjct: 1109 RPSRRSLSKSVSKSPSPA 1126
>SB_44323| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 213 SRPRQPLVFKV-DHPFAYF 266
+RP QPLVFK+ P YF
Sbjct: 25 TRPPQPLVFKIASFPLCYF 43
>SB_27720| Best HMM Match : MOZ_SAS (HMM E-Value=8.1e-13)
Length = 79
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 152 IYFDKCLLEGFRHYYTVTLDDVWCRLVEYFRNSKLGHQRFKV 27
+Y+D +E F Y D C LV YF K Q++ V
Sbjct: 19 LYYD---VEPFLFYVLTQNDKKGCHLVGYFSKEKSCQQKYNV 57
>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1514
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 169 PALSLVQLLYHIHRIPDLASLW 234
P L L ++ +HR PD A LW
Sbjct: 3 PRLGLRHIVKAVHRHPDRAELW 24
>SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 169 PALSLVQLLYHIHRIPDLASLW 234
P L L ++ +HR PD A LW
Sbjct: 52 PRLGLRHIVKAVHRHPDRAELW 73
>SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 200 WYSNCTSESAGCGSFFIYFDKCLLEGFRHYYT 105
W+ C S + GS+ IY D +L+ +Y T
Sbjct: 278 WHLLCFSWRSSDGSYKIYLDGVILKSSSNYQT 309
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,238,546
Number of Sequences: 59808
Number of extensions: 158024
Number of successful extensions: 293
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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