Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P16
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50130.2 68418.m06208 short-chain dehydrogenase/reductase (SD...    31   0.68 
At3g29030.1 68416.m03627 expansin, putative (EXP5) identical to ...    30   1.2  
At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2, chlorop...    28   3.6  
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a...    28   4.8  
At3g06490.1 68416.m00753 myb family transcription factor (MYB108...    28   4.8  
At3g20720.1 68416.m02622 expressed protein                             27   6.4  
At1g30930.1 68414.m03786 F-box family protein contains F-box dom...    27   6.4  

>At5g50130.2 68418.m06208 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 277

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 385 DERGGVTPNPPHPGC*FHELRSGPLLALQSRIPDTYFLQLEPLLMVFHQLQHTM 224
           D    VT N  HPG     +++G + A +    D+ FL    LL    QLQH M
Sbjct: 226 DRNANVTINAVHPGI----VKTGIIRAHKGLFTDSLFLIASKLLKSISQLQHVM 275


>At3g29030.1 68416.m03627 expansin, putative (EXP5) identical to
           expansin At-EXP5 GB:AAB38071 from [Arabidopsis
           thaliana]; alpha-expansin gene family, PMID:11641069
          Length = 255

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 433 HHPGSYSGPWVNS 471
           HHPG + GPW+N+
Sbjct: 29  HHPGGHMGPWINA 41


>At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2,
           chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate
           5'-adenylylsulfate (APS) sulfotransferase 2 /
           3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase
           homolog 43 (PRH-43) identical to SP|P92981
           5'-adenylylsulfate reductase 2, chloroplast precursor
           (EC 1.8.4.9) (Adenosine 5'-phosphosulfate
           5'-adenylylsulfate sulfotransferase 2) (APS
           sulfotransferase 2) (Thioredoxin independent APS
           reductase 2) (3'-phosphoadenosine-5'-phosphosulfate
           reductase homolog 43) (PAPS reductase homolog 43)
           (Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS
           reductase homolog (PRH43) GI:1710115
          Length = 454

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 229 YAEVDEKPLTAARV-GENKYQVSWTEEPAKARS-GVHEINILDEEGWASLRRA 381
           Y  +  +P T   + G+++ +  W  E AKA+  G+H+ NI +E+G A  + A
Sbjct: 281 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEEDGAADSKPA 333


>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 1007

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 295 WTEEPAKARSGVHEINILDEEGWASLRRARRSDPTATVAPLLAI 426
           W  +P  A +GV+ IN  D  GW++L  A  S    TVA L+++
Sbjct: 627 WAIKPVLA-AGVN-INFRDANGWSALHWAAFSGREETVAVLVSL 668


>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
           identical to transcription factor MYB108 GI:15375290
           from [Arabidopsis thaliana]
          Length = 323

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 169 AYITEFSLKCDNPLPENYALYAEVDEKPLTAARVGENKYQVSWTEE---PAKARSGVHEI 339
           +Y  + +L     LP+NY  Y+ + ++ LTA +   N   +SW E     A +   +  I
Sbjct: 245 SYYPDQNLVSSQLLPDNYFDYSGLLDEDLTAMQEQSN---LSWFENINGAASSSDSLWNI 301

Query: 340 NILDEEGW 363
              DEE W
Sbjct: 302 GETDEEFW 309


>At3g20720.1 68416.m02622 expressed protein 
          Length = 1083

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 375 PRSSLRPDCHCCSITRYSTPSSW 443
           P S    +CH  SI  Y TP +W
Sbjct: 754 PLSEKDMECHSVSIVAYGTPGNW 776


>At1g30930.1 68414.m03786 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 376

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 GYVYCSCIRCPQEQEQNSSIIC 551
           G +Y  C+R P+E E    ++C
Sbjct: 107 GLIYFKCMRIPKEDEDEKPVLC 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,579
Number of Sequences: 28952
Number of extensions: 243609
Number of successful extensions: 570
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)