Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P15
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249...    52   2e-07
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790...    35   0.037
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    33   0.086
11_01_0605 + 4821363-4823246                                           30   1.1  
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600...    30   1.1  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    29   1.4  
05_02_0125 - 6852470-6852481,6852641-6853086,6853178-6853781,685...    29   1.8  
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348...    29   1.8  
11_01_0606 + 4831102-4833033                                           29   2.4  
06_01_1186 - 10195175-10195621,10195882-10195930,10196019-101961...    28   4.3  
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309...    28   4.3  
04_04_0579 - 26355431-26355684,26355988-26356073,26356292-263563...    27   5.6  
01_01_0174 - 1496543-1496596,1496686-1498131,1498928-1499341           27   5.6  
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448...    27   7.4  
03_03_0184 + 15228045-15228405,15228725-15228883,15228984-152292...    27   7.4  
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051...    27   9.8  
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040...    27   9.8  

>01_06_1005 +
           33723743-33723946,33724035-33724256,33724789-33724901,
           33725581-33725950
          Length = 302

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
 Frame = +3

Query: 57  VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLL--RGNL 230
           VG++G+G +G   A L A+ G  V L D     ++ A+  I   L+ L   G L      
Sbjct: 13  VGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCE 72

Query: 231 NADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXX 410
           ++ EQ +CV    +L    +DA  V E + E+ ++KKK+F  LD +   + I        
Sbjct: 73  HSIEQIKCVSSVQEL----RDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSI 128

Query: 411 XXXXXXENMKHKAQVI 458
                        QVI
Sbjct: 129 SITRLASATNRPCQVI 144


>07_01_0935 +
           7905748-7905765,7906071-7906096,7906142-7906166,
           7906891-7907700,7907803-7907934,7908102-7908470,
           7908540-7908671,7909135-7909662
          Length = 679

 Score = 34.7 bits (76), Expect = 0.037
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = -2

Query: 334 SSKFSGTHSCTKIASLTAIAK-SQVPFTHWNCSSAFRFP-LRSPSFSKVFNCTLISAIAS 161
           +S FSG  + T  +S + +A   Q+P + W+       P  R   FS      ++  I  
Sbjct: 432 TSTFSGRVTATAWSSTSDLALLRQIPLSVWSSYDYCLLPDQRCSDFSHYLYFNVVGLITR 491

Query: 160 VICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFS 50
             C  T+   ++W+ +  N +  D      PT  TFS
Sbjct: 492 HDCERTSGYAISWWSSYGNCLVLDKRCGVPPTTSTFS 528


>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 33.5 bits (73), Expect = 0.086
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 175 SAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNL 38
           S + S+I  ST +  ++W     N ++ DLP+    T P  S LNL
Sbjct: 355 SFVGSLILPSTVNQNLSWLDASYNRLSGDLPVDINITFPNLSYLNL 400


>11_01_0605 + 4821363-4823246
          Length = 627

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 382 VLSSTTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAKSQVP 260
           +LSS   +K WNT     ++SG H C+ +AS   + +  +P
Sbjct: 51  ILSSVGSTKNWNTCSNPCQWSGVH-CSSVASSAFVTRLSLP 90


>04_04_0590 +
           26457514-26457801,26458849-26459325,26459817-26460027,
           26460219-26460376,26460461-26460531,26460707-26460812,
           26460880-26460966,26461591-26462148,26462245-26462308,
           26463352-26463485,26463568-26463621,26464321-26464417,
           26465620-26465825,26465901-26465984,26466265-26466330,
           26466883-26466956,26467664-26467751,26467830-26467928
          Length = 973

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 158 NLLLNNIEQSYLVSD*SEQHSP*SPDQSTPNNSNFFRFKLGSHDDT 21
           N+ L N+ + +L SD  +       +    +NSN FR+  GS DDT
Sbjct: 761 NMSLRNLAEKFLTSDPDKMMI--LKENGFSSNSNSFRYSGGSRDDT 804


>04_04_0214 -
           23674270-23676858,23677574-23680843,23680941-23681119,
           23681200-23681559,23681645-23682086,23682199-23682332,
           23682479-23682680
          Length = 2391

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 54  KVGIVGSGLIGRSWAMLFASVGYQ-VTLFD 140
           ++GIVG+G  G S A   A +GY+ VTLF+
Sbjct: 23  RIGIVGAGPSGLSAAYALAKLGYRNVTLFE 52


>05_02_0125 -
           6852470-6852481,6852641-6853086,6853178-6853781,
           6853970-6854187,6854283-6854437,6854561-6854772
          Length = 548

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 82  ISPLPTIPTFSDLNLEAMTTRSVCNG 5
           ++ LP +PT   LN+   T  S+CNG
Sbjct: 234 VTCLPILPTLRCLNMSNCTIHSICNG 259


>01_06_1626 -
           38734128-38734160,38734386-38734560,38734819-38734878,
           38734961-38735059,38735191-38735224,38735315-38735374,
           38735596-38735696,38735949-38736014,38736695-38736825,
           38736946-38737038,38737273-38737338,38737459-38737494,
           38738308-38738382,38738475-38738792
          Length = 448

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 289 LTAIAKSQVPFTHWNCSSAFRFPLRSPSFSKVFN 188
           +  +A S++   HW+   A  FP+  PS+ K++N
Sbjct: 188 IDTMAYSKLNVLHWHIVDAQSFPIEIPSYPKLWN 221


>11_01_0606 + 4831102-4833033
          Length = 643

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 370 TTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAKSQVP 260
           ++L+K WNT     ++SG H CT  AS + + +  +P
Sbjct: 61  SSLTKSWNTSSNPCEWSGVH-CTSAASSSFVTRLSLP 96


>06_01_1186 -
           10195175-10195621,10195882-10195930,10196019-10196168,
           10196513-10196658,10196877-10196914,10197000-10197216,
           10197393-10197611,10197753-10197879,10198631-10198812,
           10198928-10199131,10199773-10199782,10200789-10200815,
           10201072-10201132,10201731-10201851
          Length = 665

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 129 TLFDVVEKQITDAIADIKVQ-LKTLEKDGLLRGNLNADEQFQCVKGTCDLAIAVKDAIFV 305
           +LFD   K++TD   +I+V  ++ L+K   L  N +  E  + +K  CD  +  ++ + V
Sbjct: 348 SLFDEFLKRLTDRAVEIRVSVIEHLKK--CLMSNHSRPEAQEIIKALCDRLLDYEENVSV 405

Query: 306 QECVPENL 329
           +    E L
Sbjct: 406 KCYTMERL 413


>03_06_0410 -
           33728507-33729415,33729511-33729654,33730054-33730920,
           33731371-33731913
          Length = 820

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 250 WNCSSAFRFPLRSPSFSKVFNCTLISAIASVICFSTTSN 134
           + CSS  R P R PS+S +       ++ S  CF+TTS+
Sbjct: 586 YTCSSVIRTPRRVPSWSCISRENSTGSL-SEDCFATTSS 623


>04_04_0579 -
           26355431-26355684,26355988-26356073,26356292-26356377,
           26356596-26356788,26356895-26357094,26359257-26359379
          Length = 313

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 259 FTHWNCSSAF-RFPLRSPSFSKVFNCTLISAIASVICFSTTSNKVTWYP 116
           F ++ C S + R PL    +   +N   +S ++S+    ++   V WYP
Sbjct: 155 FQYFECDSPYERMPLADKVYELCYNFPPLSYLSSIELSPSSWMSVFWYP 203


>01_01_0174 - 1496543-1496596,1496686-1498131,1498928-1499341
          Length = 637

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 196 VFNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLP 68
           + NC   S I S IC   + ++  W   + N+  +  P  PLP
Sbjct: 42  ILNCKSDSLIPSYICSVISKSRWGWASDDPNDDEYTPPDHPLP 84


>05_05_0195 +
           23142830-23143714,23144288-23144314,23144657-23144866,
           23144976-23145242,23146290-23146376,23146495-23146553,
           23147166-23147768,23148063-23148192,23148570-23149100,
           23149636-23149743,23149911-23150456,23150957-23151079,
           23151494-23151709
          Length = 1263

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 333 VPNFPGRILVRKSHP*RQSLNHRYLSHIGTVHPHLDFPLGVH 208
           + NF G  +V+ S   +  LN   + H+G++H +L+  + VH
Sbjct: 349 INNF-GSSVVKFSRS-QAKLNSEIVKHLGSIHEYLEMMISVH 388


>03_03_0184 +
           15228045-15228405,15228725-15228883,15228984-15229258,
           15229346-15229594,15229670-15229788,15229874-15229972,
           15230068-15230176,15230281-15230421
          Length = 503

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 47  IGKSWNCWEWTDREIMGYVVRFSRIPSNFVR 139
           I  SW  W   D E+ GYVV +  +    VR
Sbjct: 444 INSSWRPWYSDDNEVAGYVVGYKGLVFATVR 474


>03_05_0044 +
           20203644-20204054,20204695-20204916,20205092-20205130,
           20206275-20206396,20206489-20206639,20207892-20207963,
           20208256-20208351,20208861-20208949,20209068-20209134,
           20210197-20210235,20210369-20210429,20210572-20210681,
           20210766-20210840,20210914-20210982,20213126-20213247,
           20214682-20214807,20214897-20215017,20215133-20215233,
           20215564-20215624,20216560-20216613,20217585-20217689
          Length = 770

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 268 VI*RLPLRMRFSYKNASRKIWNSKRKYSKIWTMSSMTTLSYRVQLVQHYR 417
           V+  +PL   F Y  A R +   K ++S  +   +  +   ++QLV  Y+
Sbjct: 715 VVCHVPLNNMFGYSTALRSMTQGKGEFSMEYLEHNTVSQDVQMQLVNTYK 764


>01_07_0031 -
           40603243-40603491,40603617-40603799,40603896-40604084,
           40604244-40604916,40605583-40605737
          Length = 482

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 267 CDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDD 377
           C LA   + AI + +CVP  +++ +K   +  N  DD
Sbjct: 138 CSLAPCSESAILIADCVPMAMQIFQKAI-STSNAYDD 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,137,205
Number of Sequences: 37544
Number of extensions: 234719
Number of successful extensions: 659
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)