Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P13
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.3  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -1

Query: 220 HNILSTIGSFPEKFAQEIWIKIDIYFRAARCRCLF 116
           H +    G FP +   ++W+ +      A C  LF
Sbjct: 336 HMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALF 370


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -1

Query: 220 HNILSTIGSFPEKFAQEIWIKIDIYFRAARCRCLF 116
           H +    G FP +   ++W+ +      A C  LF
Sbjct: 304 HMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALF 338


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 454 NEPIIFIAEFVIYAFTISTVTVRYY 380
           NE  IF+A    +++ I  + + YY
Sbjct: 206 NEIRIFVATIFTFSYCIPMILIIYY 230


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 416 RIYNFDGHRSLLSSV 372
           +IY F GH S ++SV
Sbjct: 250 KIYLFSGHESNIASV 264


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 416 RIYNFDGHRSLLSSV 372
           +IY F GH S ++SV
Sbjct: 265 KIYLFSGHESNIASV 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,463
Number of Sequences: 438
Number of extensions: 1561
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)