Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P11
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   0.88 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   3.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   4.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 212 VRRQPASHSKCSRGTKSLPS 271
           V+ +P  HS C+ G+  LP+
Sbjct: 28  VKSEPQLHSPCATGSNGLPA 47


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 405 ETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMS 521
           +TLG   N I EP+ +     T K ++  A AP   D++
Sbjct: 380 QTLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRDLT 418


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -3

Query: 281 QYETRGAILYLESI*NGRQVVFELYINHSTDNCNHLTLGFACSFCRIVPLVDGR 120
           QY+T  +  +     N  Q  F    N +  N N+   GF+C + +    V G+
Sbjct: 217 QYDTESSYQF-----NDPQFNFNYQYNQAYSNYNNYQEGFSCQYYQGKNCVGGK 265


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 281 QYETRGAILYLESI*NGRQVVFELYINHSTDNCNHLTLGFACSF 150
           QY+T  +  +     N  Q  F    N +  N N+   GF+C +
Sbjct: 197 QYDTESSYQF-----NDPQFNFNYQYNQAYSNYNNYQEGFSCQY 235


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 297 SAARPPIRDEGSDFVPREHLEW 232
           S ++PP R   +DF P+   +W
Sbjct: 256 SVSQPPNRKPRTDFKPQVLPQW 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,484
Number of Sequences: 336
Number of extensions: 3843
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)