Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_P11
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 49 3e-06
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 40 0.002
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 32 0.41
03_01_0145 - 1158306-1158706,1159012-1159177,1159250-1159438,115... 31 0.95
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 30 1.3
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 29 2.9
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 2.9
03_03_0130 - 14699658-14699723,14699828-14700109,14700444-147005... 29 2.9
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 29 3.8
06_01_0819 - 6191262-6192236 29 3.8
03_05_0057 + 20350971-20351405 29 3.8
01_01_0165 - 1410137-1410924,1411774-1411933 29 3.8
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502... 28 5.1
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 27 8.9
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 27 8.9
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +3
Query: 300 GENTVRTIAMDGTEGLV-RGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 476
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 163
Query: 477 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGK 593
I + + + +E++ TGI +D++ A+G K
Sbjct: 164 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 202
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 39.9 bits (89), Expect = 0.002
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Frame = +3
Query: 300 GENTVRTIAMDGTEGLV-RGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 476
GE V + +GT G+ + V +G ++ PV + LGR+ N G+PID PI +
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEA 123
Query: 477 TAAI------HAEAPEFVDMSVQ---QEILVTGIKVVDLLAPYAKGGK 593
I A A ++ S + +E++ TGI +D++ A+G K
Sbjct: 124 YLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 171
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 31.9 bits (69), Expect = 0.41
Identities = 23/75 (30%), Positives = 27/75 (36%)
Frame = -1
Query: 460 GPRSSIGSPMTLMIRPRVSAPTGIRMGEPESCTGCPRTKPSVPSMAMVRTVFSPKCCATS 281
GPR L P V + G P + G PR PS P + PKC
Sbjct: 841 GPRPPTTRAGPLPACPTVPGAPDPQDG-PGATAGRPRLSPSDPEVVGTEAE-CPKCAQLK 898
Query: 280 NTRRGERFCTSRAFR 236
R G FCT F+
Sbjct: 899 LLREGAAFCTQDCFK 913
>03_01_0145 -
1158306-1158706,1159012-1159177,1159250-1159438,
1159554-1159766
Length = 322
Score = 30.7 bits (66), Expect = 0.95
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = -3
Query: 578 IGCEQIHDFDASHKDLLLYGHVYKFGSFSVDGSCFISRNRAAFVNRLTDDIDDTAQSLGS 399
+ C I F A +L G Y+ + DG+ ++ + A + R T D+ QS +
Sbjct: 118 VSCADILAFAARDSVVLAGGTPYRVPAGRRDGNTSVASDAMANLPRPTSDVAQLTQSFAT 177
Query: 398 YGDTDG*TRVMYGLSAH*TLGTVH-GNGSDRIF 303
+G + ++ G AH T+G H + S R++
Sbjct: 178 HGLSQDDMVILSG--AH-TIGVAHCSSFSSRLY 207
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 222 NLPPILNALEVQNRSPRL-VLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSGS 380
NLPP+L ++ +N + +L+ GEN +R T + + +H++ S
Sbjct: 2825 NLPPLLEVMQARNPGTHMAILDEVNEYGENVLRRAFWSHTPCTLESKDLHEACS 2878
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 343 PSVPSMAMVRTVFSPKCCATS 281
P+ PS A VR SP+CC+ S
Sbjct: 3 PTAPSPASVRAAASPRCCSRS 23
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 321 IAMDGTEGLVRGQPVHDSGSPIRIPVGAE-TLGRIINVIGEPIDERGPI 464
I D E + P S S +P AE L I NV+GE +D+ GP+
Sbjct: 128 IVPDSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGPV 176
>03_03_0130 -
14699658-14699723,14699828-14700109,14700444-14700545,
14701038-14701385
Length = 265
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 396 RGYGWVNQSHVRVVRALNPRYRPWQWFGPYFHPSAARPPIRDEGSDFVPR 247
RG+G+V S V V A ++ + G ++ PP R++ S PR
Sbjct: 127 RGFGFVTMSSVEEVEAAVEQFNGYILDGRSLRVNSGPPPPREQSSQRAPR 176
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -1
Query: 442 GSPMTLMIRPRVSAPTGIRMGEPESCTGCPRTKPSVPSMAMV 317
GSP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKA----QNSRPSIPHPSLI 489
>06_01_0819 - 6191262-6192236
Length = 324
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -2
Query: 420 YGPESRLLRGYGWVNQSHVRVVRALNPRYRPWQWFGPYFHPSAAR--PPIRDEGSD 259
+GP SR Y WV S + P W + P + P AA PP D G D
Sbjct: 184 HGPVSRAGAAYAWVGNSATQC-----PGQCAWPFHQPVYGPQAAPLVPPSGDVGMD 234
>03_05_0057 + 20350971-20351405
Length = 144
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = -1
Query: 466 GIGPRSSIGSPMTLMIRPRVSAPTGIRMGEPESCTGCPRTKPSVPSMAMVRTVFSPKCCA 287
G G + +G+ +++ +A +++ +PE C+ P P + S FSP
Sbjct: 59 GAGGVARLGTVSVVVLSSPKAAREALKVHDPECCSRSPSAGPRMLSYGYKDVAFSPYSNY 118
Query: 286 TSNTRR 269
N R+
Sbjct: 119 VRNMRK 124
>01_01_0165 - 1410137-1410924,1411774-1411933
Length = 315
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 391 IRMGEPESCTGCPRTKPSVPSMAMVRTVFSP 299
+R+G P C G P + PS ++A R V P
Sbjct: 14 LRLGLPARCLGDPSSSPSALAIARCRNVAGP 44
>10_08_0290 +
16549048-16549262,16549770-16549833,16550106-16550267,
16550786-16550956,16551041-16551235,16551421-16551546,
16551648-16551809,16551953-16552120,16552223-16552435
Length = 491
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -3
Query: 569 EQIHDFDASHKDLLLYGHVYKFGSFSVDGSCFISRNRAAFVNRLTDDIDDTA 414
+ +HD + + LYG S D I NR+ F+ +++DD+ TA
Sbjct: 311 QTLHD---GEETVSLYGEHKLENSIPADDQKLIEENRSNFLEKMSDDLHTTA 359
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 400 PTGIRMGEPESCTGCPRTKPSVPSMAMVRTVFSP 299
P G++ P + GC P +P M + R V P
Sbjct: 40 PVGVQAAFPHAAAGCAPPPPVMPVMIVYRVVQPP 73
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 384 WVNQSHVRVVRALNPRYRPWQWFGPYFHPSAARPPIRD 271
W H R++ L +Y P Q F P+ A PP D
Sbjct: 138 WEKDKHYRMLYRLEKKYFPDQSLDNAFVPADASPPSSD 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,744,962
Number of Sequences: 37544
Number of extensions: 438768
Number of successful extensions: 1306
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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