Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P11
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               227   5e-60
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   9e-11
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 38   0.006
SB_45224| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)                 30   1.3  
SB_45729| Best HMM Match : rve (HMM E-Value=5.8e-21)                   30   1.3  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            28   5.2  
SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)                    28   6.9  
SB_5567| Best HMM Match : Ion_trans_2 (HMM E-Value=4.9e-09)            28   6.9  
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)           27   9.1  
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)         27   9.1  
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  227 bits (555), Expect = 5e-60
 Identities = 107/128 (83%), Positives = 118/128 (92%)
 Frame = +3

Query: 210 QFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSPIR 389
           QF+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ   D+G PI 
Sbjct: 87  QFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGPIT 146

Query: 390 IPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 569
           IPVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAPEFV+MS +QEIL TGIKVVDLL
Sbjct: 147 IPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVDLL 206

Query: 570 APYAKGGK 593
           APYAKGGK
Sbjct: 207 APYAKGGK 214


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
 Frame = +3

Query: 321 IAMDGTEGLVR-GQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAE 497
           + + G + L++ G  V  +G+ + +PVG E LGR+++ +G PID +GP    + A +  +
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70

Query: 498 APEFVDMSVQQEILVTGIKVVDLLAPYAKGGKD 596
           AP  +  +  +E ++TGIK VD L P  +G ++
Sbjct: 71  APGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRE 103


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +3

Query: 534 ILVTGIKVVDLLAPYAKGGK 593
           +L TGIKV+DL+ PYAKGGK
Sbjct: 2   VLFTGIKVIDLIEPYAKGGK 21


>SB_45224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -1

Query: 544 VTRISCCTDMSTNSGASAWMAAVLSVGIGPRSSIGSPMTLMIRPRVSAPTGIR 386
           + R   C   S++     W +  L V I P   +G   TL I PR   P G R
Sbjct: 45  IRRAQSCVLRSSSPATVVWPSEFLEVEIQPE--LGEDCTLAIEPRTDIPVGKR 95


>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
          Length = 1641

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +1

Query: 85   KPLQNVAR-LQLCLPSTRGTMRQKLQAKPKVRWLQLSVLWLMYSSKT-TCLPF*MLSRYK 258
            K ++++A+    CL +T  + R+ LQ  PK  W ++SV +   +SK    L     +R+ 
Sbjct: 1379 KQVKSMAKSCSACLITTPESTREPLQPLPKSPWTEVSVDFAELASKEYLLLIVDDYTRFP 1438

Query: 259  IAPLVSYWRSRSTWVKIRSEPLPWTVPRV*CADN 360
            I  +VS   + +   K+      + VP V  +DN
Sbjct: 1439 IVEIVSSTSATTVLPKLDKVFSEYGVPEVVRSDN 1472


>SB_45729| Best HMM Match : rve (HMM E-Value=5.8e-21)
          Length = 611

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +1

Query: 85  KPLQNVAR-LQLCLPSTRGTMRQKLQAKPKVRWLQLSVLWLMYSSKT-TCLPF*MLSRYK 258
           K ++++A+    CL +T  + R+ LQ  PK  W ++SV +   +SK    L     +R+ 
Sbjct: 296 KQVKSMAKSCSACLITTPESTREPLQPLPKSPWTEVSVDFAELASKEYLLLIVDDYTRFP 355

Query: 259 IAPLVSYWRSRSTWVKIRSEPLPWTVPRV*CADN 360
           I  +VS   + +   K+      + VP V  +DN
Sbjct: 356 IVEIVSSTSATTVLPKLDKVFSEYGVPEVVRSDN 389


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/69 (34%), Positives = 29/69 (42%)
 Frame = -1

Query: 505 SGASAWMAAVLSVGIGPRSSIGSPMTLMIRPRVSAPTGIRMGEPESCTGCPRTKPSVPSM 326
           SG+S+  A +L    GP SS+  P T    P    PTG+ M  P S    P   P  P M
Sbjct: 671 SGSSS--AQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGM 725

Query: 325 AMVRTVFSP 299
                  SP
Sbjct: 726 GTHPQQVSP 734


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 354 GQPVHDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 461
           GQP +D+G P     G   +  G+++N  GEP++  GP
Sbjct: 94  GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130


>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 547 PVTRISCCTDMSTNSGASAWM-AAVLSVGIGPRSSIGSPMTLM 422
           P  R+SC   +ST + +S+W+  AVL   +  R S+ SP++++
Sbjct: 291 PARRVSCSAAISTFNLSSSWLIMAVLRRPLMLRMSVVSPVSMV 333


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 375 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 470
           G PI  P+G   +GR I  IG PI   GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -1

Query: 523 TDMSTNSGASAWMAAVLSVGI--GPRSSIG-SPMTLMIRPRV-SAPTGIRMGEPESCTG 359
           T    + GA+   A   S G+  G   +   S +T   +P   SAPTGI  G+P S TG
Sbjct: 81  TTTGISFGATGTQATSASTGLSFGQLGNTSTSTLTAFGQPSTTSAPTGISFGQPTSSTG 139


>SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +1

Query: 301 VKIRSEPLPWTVPRV*CADNPYMTLVHPSVSP*EPRLWAVSSMSS 435
           V  R +P  W + +V     P + ++    +  +PR+WA+  +++
Sbjct: 154 VTTRQQPRVWAIDQVTTRQQPRVWVIDQVTTRQQPRVWAIDQVTT 198


>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
          Length = 600

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
 Frame = +3

Query: 279 LEVAQHL--GENTVRTIAMDGTEGLVRGQPVHDSGSPIRIP-VGAETLGRIINV-IGEPI 446
           L V +H   G N+ +T ++  T+   RG  V     PI++P V A  +  +     G   
Sbjct: 466 LPVVEHFLGGRNSCKTSSVQLTDSKPRGSSVAIINQPIKVPDVNAPGIAIVCQTSSGHQT 525

Query: 447 DERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGG 590
           D +   P      +H +      +    E+   G    D+LA  A  G
Sbjct: 526 DSK---PRGDDVLLHRQGDHLAGLVSAGEVRSPGCSPEDVLAVPASPG 570


>SB_5567| Best HMM Match : Ion_trans_2 (HMM E-Value=4.9e-09)
          Length = 348

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 362 GLSA-H*TLGTVHGNGSDRIFTQVLRDLQYETRGAIL 255
           G SA H T GT  GN SDR   Q L D +  +R  ++
Sbjct: 285 GASAGHGTEGTERGNDSDRFEMQTLEDEEENSRTRVM 321


>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
          Length = 1119

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 399 GAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDM 518
           G + L R++ V+ +PI+E   +P D      A++P+F  +
Sbjct: 15  GDDWLRRLLEVLPDPIEEDNYLPPDFFYDSLADSPQFASL 54


>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
          Length = 636

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 213 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSG 377
           F++++ P+LN L +  +S  L L   ++ G N V     +GT    + +  H  G
Sbjct: 174 FQESVCPVLNTLTLHIKSSELDLNRPRNRGSNKVENGKNEGTAMETKDKVEHVPG 228


>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 408 SRLLRGYGWVNQSHVRVVRALNPRYRPWQWFGPYFHPSA 292
           S+ + G+G    S VRV    +P   PW+ F P F P A
Sbjct: 421 SKRVVGFGCCTLSTVRVTE-FSPLVSPWKPFQPEFSPYA 458


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,245,425
Number of Sequences: 59808
Number of extensions: 486798
Number of successful extensions: 1413
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)