Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P10
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47356-7|CAD31695.1|  249|Caenorhabditis elegans Hypothetical pr...   190   8e-49
AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain (...    61   5e-10
Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical pr...    55   4e-08
Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical pr...    46   1e-05
Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra...    28   4.1  
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     28   5.4  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    28   5.4  
Z79600-1|CAB01873.1|  239|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF024493-10|AAK68346.1|  232|Caenorhabditis elegans C. elegans N...    27   9.4  

>Z47356-7|CAD31695.1|  249|Caenorhabditis elegans Hypothetical
           protein T15H9.7 protein.
          Length = 249

 Score =  190 bits (462), Expect = 8e-49
 Identities = 88/173 (50%), Positives = 113/173 (65%), Gaps = 2/173 (1%)
 Frame = +1

Query: 1   SDPEKREMYDRCGEECLKK--DGMMNNNDPXXXXXXXXXXXXXXEPQQHETPRGADILME 174
           SD EKR MYDR GEE + K   G    +DP                 +  TP+GAD+ ++
Sbjct: 77  SDKEKRAMYDRHGEEGVAKMGGGGGGGHDPFSSFFGDFFGGGGGHGGEEGTPKGADVTID 136

Query: 175 LTVSLEELYNGNFIEITRNKPVIKPAAGTRKCNCRQEMVTRNLGPGRFQMMQQTVCDECP 354
           L V+LEE+YNG+F+EI R K V K  +GTR+CNCR EM T  +G GRFQM Q  VCDECP
Sbjct: 137 LFVTLEEVYNGHFVEIKRKKAVYKQTSGTRQCNCRHEMRTEQMGQGRFQMFQVKVCDECP 196

Query: 355 NVKFVNEERLLEIEVEVGAPDGHKSRLRGEGEPHVDGEPGDLIMVFRTERHPK 513
           NVK V E ++LE+EVEVGA +GH+    GEGEPH++G+PGDL    R ++HP+
Sbjct: 197 NVKLVQENKVLEVEVEVGADNGHQQIFHGEGEPHIEGDPGDLKFKIRIQKHPR 249


>AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 19 protein.
          Length = 439

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 28/164 (17%)
 Frame = +1

Query: 160 DILMELTVSLEELYNGNFIEITRNKPVI-KPAAGTR-------KCN-CRQ---EMVTRNL 303
           D +  L V+LEELY G   ++  +K  + K   G+        KC+ CR    + + + +
Sbjct: 141 DTVHPLNVTLEELYVGKTSKLKLSKKALCKTCEGSGGKKGEKYKCDACRGRGVKTIVQQI 200

Query: 304 GPGRFQMMQQTV---------------CDECPNVKFVNEERLLEIEVEVGAPDGHKSRLR 438
           GPG  Q MQ                  C  C   K+ N  ++LE+ V  G     K   +
Sbjct: 201 GPGMLQQMQVHCDACKGSGGKVPAGDKCKGCHGEKYENVSKILEVHVLPGMKHNDKITFK 260

Query: 439 GEGEPH-VDGEPGDLIMVFRTERHPKYTRKGDDLYTNVTISLQD 567
           G+G+    DGEPGD+++V + + H  + R GDDL+    +SL +
Sbjct: 261 GDGDQSDPDGEPGDVVIVIQQKDHDIFKRDGDDLHMTKKLSLNE 304


>Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical
           protein F39B2.10 protein.
          Length = 402

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +1

Query: 325 MQQTVCDECPNVKFVNEERLLEIEVEVGAPDGHKSRLRGEGEPHVDGE-PGDLIMVFRTE 501
           +++  C +C   K V E+ ++E+ +  G  DG K    G+G+  +  E PGD ++V    
Sbjct: 189 LEKDRCKKCNGKKQVKEDEIIEVGITPGMKDGEKFVFEGKGDEVIGIEKPGDFVVVLDEV 248

Query: 502 RHPKYTRKGDDLYTNVTISLQD 567
            H K+ RKGD+L     I L +
Sbjct: 249 EHEKFVRKGDNLIIQHNIDLSE 270


>Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical
           protein F54D5.8 protein.
          Length = 331

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = +1

Query: 373 EERLLEIEVEVGAPDGHKSRLRGEGEPHVDGEPGDLIMVFRTERHPKYTRKGDDLYTNVT 552
           E+++L + ++ G   G K     EG+ H +  P D++ V + + HPK+ R+G D+     
Sbjct: 193 EDKVLTVTIKPGWKSGTKITFPKEGDQHPNRTPADIVFVIKDKPHPKFKREGSDIKRVEK 252

Query: 553 ISLQ 564
           ISL+
Sbjct: 253 ISLK 256



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 1   SDPEKREMYDRCGEECLKKDG 63
           SD +K+++YD+ GEE LK+ G
Sbjct: 56  SDDKKKKIYDQFGEEGLKEGG 76


>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +1

Query: 352 PNVKFVNEERLLEIEVEVGAPDGHKSRLRGEGEPHVDGEPGDLIMVFRTERHPKYTRK 525
           PN   +  +++ +    +G P+G+++  +   E   D +PG     +    HP+Y R+
Sbjct: 167 PNRNHLMRDQIRQTVYNLGVPNGYRAPEQDHFEDDYDDQPGPSNRHYGVSSHPEYYRE 224


>Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical
           protein C29F3.6 protein.
          Length = 278

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = -1

Query: 444 LTS*SRFVSIWCTHFY---LNFQQS-FFIYKFNIRTFIAYSLLHHLETSRT*VASHHLLS 277
           + S +RF+S+WC  FY    N + +  FI+   + +F+  SL  H+   R    +  +L 
Sbjct: 100 IISLNRFISVWCPIFYKTMFNLKYTKLFIFAVWLISFLIGSLF-HIVLCRIRFNADLILF 158

Query: 276 AITLASTSCW 247
            I LA + C+
Sbjct: 159 TIILAPSYCF 168


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 277  RQEMVTRNLGPGRFQMMQQTVCDECPNVKFVNEERLLEIEVEVGAPD 417
            R++  T    PG+F + +   C  CP   F NEE+  E   ++ APD
Sbjct: 1090 REQCNTPKCKPGQFLVKETKNCQFCPRGTFQNEEQ--ESTCKLCAPD 1134


>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +2

Query: 449 NHM*MGSLVTLSWCLELNDIQNIPAKEMTSTPMSLYLY 562
           N + + +L +LS  LE+N I+ IP+   + TP+  YLY
Sbjct: 225 NSLPLPNLKSLS--LEVNQIRLIPSDSFSETPLLSYLY 260


>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 12
           protein.
          Length = 1022

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
 Frame = -1

Query: 543 GVEVISFAGIFWMSFSSKHHDKVTRLPIYMWFT----LTS*SRFVSIWCTHFYLNFQQSF 376
           G+ + SF G      +S  +D +   P+Y+ FT    +TS   +  +W T F+     + 
Sbjct: 459 GMVIFSFVGFIASESNSNVNDVLKHDPLYLSFTVYPGVTSFMYWGGLWATLFFGMLVLAA 518

Query: 375 FIYKFNIRTFIAYSLLHHLETSRT*VASHHLLSAITLA 262
              +F     IA + ++H  + +     + LL+ + LA
Sbjct: 519 IDAEFAWLEMIASAFMNHF-SMKNKAVENRLLAFLCLA 555


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 250 AAGTRKCNCRQEMVTRNLGPGRFQMMQQTVCDECPN 357
           AA   +C  RQ++ TRN+G G   +  + +C  C N
Sbjct: 527 AADCEECLKRQDVFTRNVGVGACSISDK-ICVSCDN 561


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
           abnormal morphology protein19 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 250 AAGTRKCNCRQEMVTRNLGPGRFQMMQQTVCDECPN 357
           AA   +C  RQ++ TRN+G G   +  + +C  C N
Sbjct: 527 AADCEECLKRQDVFTRNVGVGACSISDK-ICVSCDN 561


>Z79600-1|CAB01873.1|  239|Caenorhabditis elegans Hypothetical
           protein F59C6.2 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 381 SFFIYKFNIRTFIAYSLLHHLETSRT 304
           SFF+++F +  +I YS++ H   +RT
Sbjct: 2   SFFVFRFVLLIYIYYSVVFHYYKART 27


>AF024493-10|AAK68346.1|  232|Caenorhabditis elegans C. elegans
          NFYC-1 protein protein.
          Length = 232

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -3

Query: 61 HPFSNILHHND 29
          HP++N++HHND
Sbjct: 58 HPYNNLIHHND 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,907,121
Number of Sequences: 27780
Number of extensions: 268958
Number of successful extensions: 601
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)