Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P09
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               285   2e-77
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.0  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   29   3.1  
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)               29   4.1  
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.4  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  285 bits (699), Expect = 2e-77
 Identities = 131/181 (72%), Positives = 148/181 (81%)
 Frame = +3

Query: 6   MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 185
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR+ DG ++IN+++TWEK   
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 186 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 365
                   E+PADV VIS+R +GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 366 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 545
           LLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAR
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180

Query: 546 E 548
           E
Sbjct: 181 E 181



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +1

Query: 547 KVLRLRGVLSRDQRWDVVVDLFFYRD 624
           +VLR+RG +SR   W+++ DL+FYRD
Sbjct: 181 EVLRMRGSISRALPWEIMPDLYFYRD 206


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 378 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 473
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 354 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTKSSHSIGLM 527
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K  +   ++
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWKIHYKKRML 314

Query: 528 WWLLARES 551
            ++ ++ S
Sbjct: 315 RFICSKVS 322


>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
          Length = 671

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 562 GVSILSRANNHHIRPMECEDLVLHGIAMSTNLRGESVLHKAITGMLTYEASVI 404
           G+ +L  AN HH+R  +C D+ L   A+ T L  +     AI  +   +  V+
Sbjct: 65  GIGVL--ANQHHLRVHKCRDVSLKKDAIKTMLNHQCPTKSAILDLEKVKEPVV 115


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = -2

Query: 320 RSETSSN-WCCASVGSKFKHSTLAKCT**DNKHISWILHGDNSTSSEYKLFPCTPKINYV 144
           RS  SS  + C + G  F H            ++S I H    T S  +LF C     + 
Sbjct: 229 RSHASSRPYSCPTCGKTFSH------------YVSLIQH--KKTHSSVRLFECKKCGKHF 274

Query: 143 RTVTTAFINVRLHLEINIFRSQMGGRRKH 57
           +  +T   ++ +H +I  F  +  G+R H
Sbjct: 275 KRSSTLSTHMLIHADIRPFSCEFCGKRFH 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,141,317
Number of Sequences: 59808
Number of extensions: 384887
Number of successful extensions: 768
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)