Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P09
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   221   3e-58
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   215   3e-56
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   215   3e-56
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.27 
At1g80540.1 68414.m09441 expressed protein ; expression supporte...    32   0.36 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.4  
At5g51370.1 68418.m06369 F-box family protein similar to unknown...    28   4.4  
At5g09560.1 68418.m01107 KH domain-containing protein various pr...    27   7.7  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  221 bits (540), Expect = 3e-58
 Identities = 101/173 (58%), Positives = 122/173 (70%)
 Frame = +3

Query: 27  LALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXX 206
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEK          
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 207 XEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 386
            E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 387 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 545
             DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLAR 184



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 15/25 (60%), Positives = 22/25 (88%)
 Frame = +1

Query: 550 VLRLRGVLSRDQRWDVVVDLFFYRD 624
           VL++RG ++  Q+WDV+VDLFFYR+
Sbjct: 186 VLQMRGTIAAGQKWDVMVDLFFYRE 210


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  215 bits (524), Expect = 3e-56
 Identities = 97/169 (57%), Positives = 119/169 (70%)
 Frame = +3

Query: 39  EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 218
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 219 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 398
            D+ V S+R +GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 399 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 545
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLAR 185



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +1

Query: 550 VLRLRGVLSRDQRWDVVVDLFFYRD 624
           VL++RG +   Q+WDV+VDLFFYR+
Sbjct: 187 VLQMRGTILAAQKWDVMVDLFFYRE 211


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  215 bits (524), Expect = 3e-56
 Identities = 97/169 (57%), Positives = 119/169 (70%)
 Frame = +3

Query: 39  EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 218
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 219 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 398
            D+ V S+R +GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 399 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 545
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLAR 185


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 360 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 509
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At1g80540.1 68414.m09441 expressed protein ; expression supported
           by MPSS
          Length = 481

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 227 HISWILHGDNSTSSEYKLFPCTPKINYVRT 138
           H +  + G N T+S Y   PC P +NY+RT
Sbjct: 79  HFNIYVDGWNVTNSHYIAPPCNPSLNYLRT 108


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 315 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 416
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g51370.1 68418.m06369 F-box family protein similar to unknown
           protein (emb|CAB82288.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 355

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 514 ECEDLVLHGIAMSTNLRGESVLHKAITGMLTYEASVIG 401
           +C D +LHGIA   NL+G  ++  ++ G+ +   S IG
Sbjct: 183 KCNDNLLHGIAACKNLKGLRLV-GSVDGLYSSSVSDIG 219


>At5g09560.1 68418.m01107 KH domain-containing protein various
           predicted RNA binding proteins, Arabidopsis thaliana
          Length = 563

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 357 EPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFVDIAIPCNTKSS 509
           +PR+  +  P+ DH+ IT AS  N PV     L  +   +R VD+ I C+ +S+
Sbjct: 271 QPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQVDLKILCSNESA 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,158,207
Number of Sequences: 28952
Number of extensions: 253401
Number of successful extensions: 583
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)