Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P08
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.2  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    25   6.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   6.2  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +1

Query: 247 DQGEGLLPSDILPGERGETG----FPGLDGRPGLYWNARKVWS 363
           D+ + LL   + P E G  G     P    RPG+YW  +++ S
Sbjct: 706 DEYQQLLFQALKPDETGMYGRIKTLPPAIQRPGIYWTGKQIIS 748


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 308 FQVLMAGQDFIGMPGKFGPNG 370
           F++ + G  F+G P   GPNG
Sbjct: 97  FEIWVDGLTFLGCPVHIGPNG 117


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 248 IKERAYFHLIFYPASVVKPVFQVLMAGQDFIGMPGKFGP 364
           +K+  +  +I   A++    FQ+   G + I +PGK  P
Sbjct: 778 LKQHPHLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYP 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,612
Number of Sequences: 5004
Number of extensions: 27545
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)