Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P08
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0078 - 25412770-25413852                                         40   0.001
05_05_0142 - 22673607-22674134                                         31   0.50 
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351     31   0.66 
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200...    29   2.0  
06_01_0145 + 1092764-1093351                                           29   2.0  
04_01_0363 + 4754650-4755912                                           29   2.0  
07_01_0640 + 4788530-4788645,4788665-4788830,4788913-4789224           29   2.7  
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116...    28   4.7  
06_01_0973 + 7530436-7530510,7530566-7531297                           27   8.2  

>05_06_0078 - 25412770-25413852
          Length = 360

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 37/109 (33%), Positives = 44/109 (40%)
 Frame = +1

Query: 7   GLKGYRGDLGEPGIAISPKGQRGERGWPGIEGLKGEQGENGEFGLDGFTGPVGLXXXXXX 186
           G  G  GD GE G  I   G  GE G  G +G  G  GE G+ G+ G TG  G+      
Sbjct: 178 GFAGEGGDTGEGGDVIGGSGFTGEGGGDG-DGGGGFTGEGGD-GVGGSTGITGVGGGGG- 234

Query: 187 XXXXXXXXXXXXXXPKGIKGDQGEGLLPSDILPGERGETGFPGLDGRPG 333
                           GI G  G+G   +    G+ G TGF G DG  G
Sbjct: 235 ----------------GISGGDGDGGCITGGGGGDEGGTGFTGFDGITG 267


>05_05_0142 - 22673607-22674134
          Length = 175

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 22/48 (45%), Positives = 27/48 (56%)
 Frame = +1

Query: 22  RGDLGEPGIAISPKGQRGERGWPGIEGLKGEQGENGEFGLDGFTGPVG 165
           RG  GE G+  S  G+ G  G  G EG++G+ GE GE G  GF G  G
Sbjct: 120 RGGGGEEGVEGS--GEGGGEGGGGEEGVEGD-GEGGEGG--GFDGGEG 162


>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
          Length = 415

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 73  GERGWPGIEGLKGEQGENGEFGLDG 147
           G+   PG +G  G++GE G+F +DG
Sbjct: 195 GKGATPGGQGCTGQKGEEGDFAIDG 219


>08_02_0665 +
           19818500-19819013,19819169-19819260,19819435-19820056,
           19820575-19820775,19821327-19821395,19821428-19821522,
           19821608-19822153
          Length = 712

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 67  QRGERGWPGIEGL-KGEQGENGEFGLDGFTGP 159
           +RGER W GI G  KG + + G   ++G  GP
Sbjct: 33  RRGERRWHGIRGAEKGVKEDGGGEAVEGSGGP 64


>06_01_0145 + 1092764-1093351
          Length = 195

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +2

Query: 347 PGKFGPNGIPGKKGEIGDIGPMGSIGIPGARGLQGIQGPRRIKR 478
           PG+ G  G PG+ G  G  G  G  G  GA G  G++  RR +R
Sbjct: 15  PGEPGQPGEPGQPGGRGRGGRGGRGGRGGAGGRLGVRHGRRGRR 58


>04_01_0363 + 4754650-4755912
          Length = 420

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 37  EPGIAISPKGQRGERGWPGIEGLKGEQGENG 129
           E G   S   +RG R WPG  G+ G++G +G
Sbjct: 259 ERGWRRSLNRERGGRTWPGEAGIAGQRGGSG 289


>07_01_0640 + 4788530-4788645,4788665-4788830,4788913-4789224
          Length = 197

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 341 GMPGKFGPNGIPGKKGEI-GDIG--PMGSIGIPGARGLQGIQGPRRIKRIR 484
           G+ G    +   GKKG+     G  P+ S   PG R  QG   PRR+  +R
Sbjct: 101 GLRGSRRRDSAGGKKGKAHASFGQRPISSRRAPGDRTTQGTSSPRRLPELR 151


>02_05_0030 +
           25209067-25209130,25209231-25209400,25210482-25211668,
           25211695-25212011,25212669-25213374,25214248-25215448
          Length = 1214

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 289 ERGETGFPGLDGRPGLYWNARKVW 360
           ERG   F G+    G++WN   VW
Sbjct: 279 ERGSNPFAGIHHSRGVHWNGSLVW 302


>06_01_0973 + 7530436-7530510,7530566-7531297
          Length = 268

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +1

Query: 4   PGLKGYRGDLGEPGIAISPKGQRGERGWPGIEGLKGEQGENGEFG 138
           PG  G RG+       I   G  G   W G EG K E+G  G  G
Sbjct: 166 PGGGGIRGEQDGLLEVIHGGGGGGGGIWAGAEGGKEEKGRGGRVG 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,315,497
Number of Sequences: 37544
Number of extensions: 207028
Number of successful extensions: 638
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)