Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P06
         (436 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   2.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    20   8.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 371 HHTPTNRVEWIRDDTGDCGD 430
           H  PT  + W+R D    GD
Sbjct: 48  HGNPTPDIIWVRSDGTAVGD 67


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 280 FFKGAFSNVLRGTGGAFVLVLYDEI 206
           F    ++  L  TGG  V+ L DEI
Sbjct: 507 FRPNTYNRFLAATGGDHVISLIDEI 531


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 386 NRVEWIRDDTGD 421
           N   W+ D TGD
Sbjct: 520 NNYPWVNDPTGD 531


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,087
Number of Sequences: 336
Number of extensions: 1817
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)