Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P06
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   154   5e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   154   5e-40
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  154 bits (373), Expect = 5e-40
 Identities = 71/81 (87%), Positives = 76/81 (93%)
 Frame = -1

Query: 436 QTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGGAAFFKGAFSN 257
           Q VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEGG AFFKGAFSN
Sbjct: 220 QVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSN 279

Query: 256 VLRGTGGAFVLVLYDEIKKLL 194
           +LRGTGGA VLVLYDEIK LL
Sbjct: 280 ILRGTGGALVLVLYDEIKNLL 300



 Score = 31.1 bits (67), Expect = 0.006
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 400 PFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGGAAFFKGAFSNVLR 248
           P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++G  +NV+R
Sbjct: 30  PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82



 Score = 27.1 bits (57), Expect = 0.091
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 403 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGGAAFFKG 269
           YP D  R R+    G+A  +  +    +C   I K +G    ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  154 bits (373), Expect = 5e-40
 Identities = 71/81 (87%), Positives = 76/81 (93%)
 Frame = -1

Query: 436 QTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGGAAFFKGAFSN 257
           Q VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEGG AFFKGAFSN
Sbjct: 220 QVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSN 279

Query: 256 VLRGTGGAFVLVLYDEIKKLL 194
           +LRGTGGA VLVLYDEIK LL
Sbjct: 280 ILRGTGGALVLVLYDEIKNLL 300



 Score = 31.1 bits (67), Expect = 0.006
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 400 PFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGGAAFFKGAFSNVLR 248
           P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++G  +NV+R
Sbjct: 30  PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82



 Score = 27.1 bits (57), Expect = 0.091
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 403 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGGAAFFKG 269
           YP D  R R+    G+A  +  +    +C   I K +G    ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 394 DTVRRRMMMQSGRAKSDILYKNTI 323
           DT+ R+ ++   + K D LY N +
Sbjct: 289 DTLIRKYIIPKEQVKEDSLYTNIV 312


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 282 PSSRAPSRTCSEVP 241
           P  RAPS  C+E P
Sbjct: 113 PGMRAPSFRCTERP 126


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 261  EKAPLKKAAPPSVLA 305
            E APL  A PP V++
Sbjct: 1106 ENAPLPPALPPQVVS 1120


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 282 PSSRAPSRTCSEVP 241
           P  RAPS  C+E P
Sbjct: 113 PGMRAPSFRCTERP 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,783
Number of Sequences: 438
Number of extensions: 2189
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)