Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P05
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...    93   3e-20
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    33   0.039
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    31   0.16 
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    29   0.63 
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   2.6  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    27   2.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   3.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   5.9  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    25   7.8  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   7.8  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 41/56 (73%), Positives = 47/56 (83%)
 Frame = +3

Query: 396 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVC 563
           M LA+DLL+PS  SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C
Sbjct: 1   MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVIC 56


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 32.7 bits (71), Expect = 0.039
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 101 SALASPKTAIAGPALIMPFLMLRPIFSIFLKTFISA 208
           SA  S   AIA P +I P   +RP+ S+F+K+  SA
Sbjct: 194 SATLSGALAIADPNIISPIDSVRPLLSLFIKSITSA 229


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 227 STKPEPERTRRKISLRSSSLNIVNFNKRNI 316
           STK  P+R +R++ L+ SS N   FN+ ++
Sbjct: 42  STKKSPKRLKRQVDLQKSSFNDKTFNESDV 71


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 278  SSLNIVNFNKRNIELRFICKHHTRGSRPR--AEFGTRQ 385
            +SL  +N N+RN+E  FI   +   +RP+  A+ GT Q
Sbjct: 1060 NSLGTMNSNERNLEQEFISLGYASKNRPKAHAQEGTNQ 1097


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 479 WMWYQSLQLMFPPLRRGGRVQ 417
           W+W+ +L L+FP  +   +V+
Sbjct: 459 WLWFMALMLLFPSYQNPNKVE 479


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 482 VWMWYQSLQLMFPPLRR 432
           VWMW+  L L+FP  ++
Sbjct: 459 VWMWFMILMLLFPQYQK 475


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 335 KHHTRGSRPRAEFGTRQSCNHAA 403
           +HH R   PR+++G+R    H++
Sbjct: 114 RHHRRSYSPRSDYGSRSPSPHSS 136


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 327 NLNSIFRLLKLTIFNDELLKDIFLRVR 247
           +LNS+ + LKL  FN E  +D+F++ R
Sbjct: 32  SLNSVLQFLKLYKFNKE-WEDVFIKSR 57


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 354 VALVPNSARGKAVTMPLAIDLLHPSPASERRKHKLK 461
           VALV  +  GK   + L ++ + PS  S  R H L+
Sbjct: 623 VALVGPNGAGKTTLIKLILEKVQPSTGSVVRHHGLR 658


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 554 NPLCVAKYRSYFVATGTF 501
           +P  + KY+ YFV T TF
Sbjct: 23  HPCSILKYKVYFVTTDTF 40


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 433 AGEGCNKSIASGMVTALPRAEFGTRAT 353
           +G+GC+K++A G  T    A    R+T
Sbjct: 58  SGKGCSKTLAGGAWTVTTAAATSARST 84


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 268 GYFSSCSL--WFWLCRQFRLRLSRNESLQE 185
           GYF + S+  W+ L  +F LRL++  S+Q+
Sbjct: 689 GYFRNVSIDAWYQLFVEFSLRLTKVGSVQQ 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,159
Number of Sequences: 5004
Number of extensions: 41611
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)