Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_P05
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 83 1e-16
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 59 3e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 57 1e-08
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 29 2.6
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 3.4
01_01_0978 + 7738232-7740848,7740929-7741320 28 4.6
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903... 28 6.0
03_02_0899 + 12257831-12257858,12258490-12258561,12259121-122604... 28 6.0
04_04_0571 - 26316169-26316620,26316741-26316809,26316917-26317097 27 8.0
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 27 8.0
>04_03_0487 +
16471538-16471540,16471694-16471795,16471880-16471908,
16472619-16472745
Length = 86
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = +3
Query: 408 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAG 569
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC G
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +3
Query: 408 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 545
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ++ F A
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52
>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
Length = 45
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +3
Query: 408 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 524
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ +
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 170 PIFSIFLKTFISAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNKRNIELRF 328
P+ IF +T S+ A+P K P++T + LR L ++N K++I+LRF
Sbjct: 1072 PLMVIF-RTLPSS-AKPATKQKVAPKKTDVRAILRP--LTVINCQKKDIQLRF 1120
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 456 TYVSSSPTRGKGAINQLRAAWLQLCLVPNSARGRLPRVW 340
+YV + GA AA LQL + PN A+ LP +W
Sbjct: 398 SYVDTQDLAADGAGGAGDAADLQLLINPNKAKKPLPPIW 436
>01_01_0978 + 7738232-7740848,7740929-7741320
Length = 1002
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = -2
Query: 477 DVVPISSTYVSSSPTRGKGAINQLRAAWLQLCLVPNSARGRLPRVWCLHINLNSI 313
D P S T VS G GA+ + A L L +A RLPRV + ++ N I
Sbjct: 51 DATPCSWTGVSCDAGVGGGAVTGISLAGLNLTGSFPAALCRLPRVASIDLSYNYI 105
>12_02_0760 -
22888636-22889407,22889503-22889769,22890001-22890302,
22890402-22890512,22890990-22891568,22892026-22892087,
22892434-22892754,22893434-22893776
Length = 918
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = +1
Query: 133 WSSLDNAVSDVATHFFNFLEDFHFGSGAAETVDKARTRANTKK 261
W S+ VSD H++ D H ++ RT+ + K
Sbjct: 690 WDSIKEWVSDYVNHYYQLASDIHMDKELQGWWNEVRTKGHPDK 732
>03_02_0899 +
12257831-12257858,12258490-12258561,12259121-12260413,
12260593-12261224
Length = 674
Score = 27.9 bits (59), Expect = 6.0
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = -2
Query: 450 VSSSPTRGKGAINQLRAAWLQLCLVPNSARGRLPRVWCLHINLNSIFRLLKLTIFNDELL 271
V+ SP R + + ++ AA L + PN+ GRL + L + N + + I + L
Sbjct: 100 VTCSPDRSRISALRVPAAGLIGAIPPNTL-GRLVSLQVLSLRSNRLIGSIPSDITSLPSL 158
Query: 270 KDIFLRVRSGSGFVDSF 220
+ IFL+ SG + SF
Sbjct: 159 QSIFLQDNELSGDLPSF 175
>04_04_0571 - 26316169-26316620,26316741-26316809,26316917-26317097
Length = 233
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 348 EEVALVPNSARGKAVTMPLAIDLLHPSP-ASERRKHKLKRLVPH 476
EEV+L + KA LA+ L HPSP S KH K V H
Sbjct: 25 EEVSLARGQSFRKADGDHLAVSLSHPSPYTSFGYKHSSKGQVIH 68
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 387 AVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSH 542
AV L L+ + ASERRK K+ L N + + YK V SH
Sbjct: 51 AVPRSLEAKLMVKTLASERRKRKVNNLERKGNKVDVSIAANDYYKPRAVKSH 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,052
Number of Sequences: 37544
Number of extensions: 284686
Number of successful extensions: 801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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