Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_P05
(571 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 35 0.054
SB_44540| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29) 31 0.88
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 30 1.2
SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2) 29 2.7
SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13) 28 4.7
SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25) 28 6.2
SB_25539| Best HMM Match : TP2 (HMM E-Value=6.5) 28 6.2
SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17) 27 8.2
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 34.7 bits (76), Expect = 0.054
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +3
Query: 378 RGKAVTMPLAID--LLHPSPA-SERRKHKL-KRLVPHPNSYFMDVKCPGCYKITTVFSHA 545
+G VT PL D L H P S R K + KR P P ++K P Y++TT+ +H+
Sbjct: 398 QGSPVT-PLTRDPTLTHSVPIISGRLKTSMNKRTKPKPGERATEIKSPSTYQVTTMVTHS 456
Query: 546 QRV 554
RV
Sbjct: 457 PRV 459
>SB_44540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = -3
Query: 533 YRSYFVATGTFDIHEIRVWMWYQSLQLMFPPLRRGGRVQ*INCERHGYSF 384
+R YF G++D E+ +W ++L+L F GGR++ + C R G+ F
Sbjct: 149 HRQYFFDIGSYD-EEMDIWGG-ENLELSFRVWMCGGRLEIVTCSRVGHVF 196
>SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29)
Length = 445
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 481 FGCGTNLFNLCFLLSDAGEGCNKSIASGMVTALPRAEF 368
+ C +C +L D G CNK +G T L RA +
Sbjct: 81 YACSNGHLEVCKMLLDRGACCNKQTKAGQDTPLHRAAY 118
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 92 IYPSALASPKTAIAGPALIMPFLMLRPIFSIFLKTFISAQAQPKLSTKPEPERT 253
+ P + A+P T +A + +MP + P ++ +T ++A+ T PE T
Sbjct: 951 VAPESTAAPDTTVAPESTVMPETTVAPETTMAPETTVAAETTASAETTVAPETT 1004
>SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2)
Length = 628
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 348 EEVALVPNSA-RGKAVTMPLAIDLLHPSPASERRKHKLKRLV---PHPNSYFMDVKCPGC 515
++V + PN+ +GK +TMP D L+ S +ER++ + R++ P Y + PG
Sbjct: 544 KQVYMNPNNIDKGKELTMPKPTDCLYNSRLNERQRAAVARILSGQSRPTPYLL-FGPPGT 602
Query: 516 YKITTV 533
K T+
Sbjct: 603 GKTVTL 608
>SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)
Length = 507
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 130 RWSSLDNAVSDVATHFFNFLEDFHFGSGAAET 225
R+SS+ NA+ D TH+ N ++D H+ + +T
Sbjct: 357 RFSSIFNAIDD--THYLNAIDDTHYLNATDDT 386
>SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)
Length = 1702
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 155 FLMLRPIFSIFLKTFISAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNKRNIELRF 328
FL+ RP+FS F T + + + ST R + LR S + F+ NI +F
Sbjct: 1639 FLLARPVFSSFSPTGSALRRSRRESTGDGSFRANFTVVLREISSQPLAFSNVNISHQF 1696
>SB_25539| Best HMM Match : TP2 (HMM E-Value=6.5)
Length = 150
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +2
Query: 218 PKLSTKPEPERTRRKISLRSSSLNIVNFNKRNIELRFICKHHTRGSRPRAEFGTRQSCNH 397
P ++PE TRR R F + R+ C RG + ++ ++ NH
Sbjct: 41 PHSRSRPEERLTRRATQGRVRETQEGTFREVQQVERYECDARYRGQQGNHKYASKPHVNH 100
Query: 398 AAR 406
AR
Sbjct: 101 VAR 103
>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
Length = 339
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 336 NTTHEEVALVPNSARGKAVTMPLAIDLL 419
N E+VA+VP +G V P+ +DL+
Sbjct: 64 NVVVEKVAIVPTDEKGNPVRDPIELDLI 91
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 444 SSPTRGKGAINQLRAAWLQLCLVPN 370
+SP RG GA +Q+ A+ C PN
Sbjct: 1833 ASPCRGNGACSQVTPAFTYTCYCPN 1857
>SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 456 LKRLVPHPNSYFMDVKCPGCYKI 524
++RLVP NSY + + GC I
Sbjct: 95 VRRLVPRTNSYILSIDLEGCTSI 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,003,710
Number of Sequences: 59808
Number of extensions: 321816
Number of successful extensions: 882
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -