Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P05
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...   102   2e-22
AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    28   4.1  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z74031-17|CAN86923.1|  380|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z74031-16|CAA98452.1|  378|Caenorhabditis elegans Hypothetical p...    27   7.2  
U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score =  102 bits (245), Expect = 2e-22
 Identities = 45/58 (77%), Positives = 48/58 (82%)
 Frame = +3

Query: 396 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAG 569
           MPLA+DLLHP P  E R HKLKRLV HPNSYFMDVKC GC+KI+TVFSHA  VVVC G
Sbjct: 1   MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVG 58


>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 417 LHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVC 563
           LH +P      H  +R VP    + MD+KCP C+K+         +V+C
Sbjct: 81  LHATPGRLHGHHS-RRSVP---VFMMDMKCPVCHKVVPSDDADIHLVMC 125


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 146 IMPFLMLRPIFSIFLKTFISAQAQPKLSTKPEPERTRRK 262
           I+  +++ PI SI +  F     QP+ + +P+P++  RK
Sbjct: 261 ILIHVIICPILSIHILIFQMYYIQPRRNPQPQPQKLERK 299


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 146 IMPFLMLRPIFSIFLKTFISAQAQPKLSTKPEPERTRRK 262
           I+  +++ PI SI +  F     QP+ + +P+P++  RK
Sbjct: 261 ILIHVIICPILSIHILIFQMYYIQPRRNPQPQPQKLERK 299


>Z74031-17|CAN86923.1|  380|Caenorhabditis elegans Hypothetical
           protein F32D8.7b protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -2

Query: 393 LQLC--LVPNSARGRLPRVWCLHINLNSIFRLLKLTIFNDEL 274
           L+LC  L+P+S+ GR  +++ L +++NSI   L  +   DEL
Sbjct: 3   LRLCRFLMPSSSAGRCAKLFLLLLSVNSILIGLVASQLPDEL 44


>Z74031-16|CAA98452.1|  378|Caenorhabditis elegans Hypothetical
           protein F32D8.7a protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -2

Query: 393 LQLC--LVPNSARGRLPRVWCLHINLNSIFRLLKLTIFNDEL 274
           L+LC  L+P+S+ GR  +++ L +++NSI   L  +   DEL
Sbjct: 3   LRLCRFLMPSSSAGRCAKLFLLLLSVNSILIGLVASQLPDEL 44


>U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical
           protein D1014.2 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 481 FGCGTNLFNLCFLLSDAGEGCNKSIASGMVTA 386
           FGCG N+ NL  LLS A       I + M  A
Sbjct: 84  FGCGGNILNLMVLLSRAMRSRTNLIFAAMAFA 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,925,372
Number of Sequences: 27780
Number of extensions: 237956
Number of successful extensions: 575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)