Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P04
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    33   0.022
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    30   0.27 
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    28   0.83 
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    27   1.9  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    27   1.9  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   4.4  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   5.9  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   7.7  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   7.7  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   7.7  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   7.7  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   7.7  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 33.5 bits (73), Expect = 0.022
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
 Frame = +1

Query: 4   GNSGGPLVNLDGEAIGINS-MKVTSGISFAIPINYVKEFLSKRQTKSPL---------VS 153
           G+SG P++++ G A+ +NS    +S  SF +P++ V   L   +  +P+         + 
Sbjct: 229 GSSGSPVLDISGAAVALNSGGSNSSASSFYLPLDRVVRALRCIENNTPITRGTLLTEFLH 288

Query: 154 KRYLGITMLSLTPNILMELRMRNPEMPTDIENGILVWKVIIGSPAYNGGLQPGDIVTKIN 333
             Y  ++ + L      + R R P        G+LV   ++ +   +  L+PGDI+    
Sbjct: 289 WSYDELSRIGLPREFEYDCRTRVPS-----STGLLVVSRVLRNSEVSKALEPGDILIAFK 343

Query: 334 GQEVHSATDVYNML 375
             + H +T + + +
Sbjct: 344 -TDSHKSTYIVDFV 356


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 100 NYVKEFLS-KRQTKSPLVSKRYLGITMLSLTPNILMELRMRNPEMPTDIENGI 255
           NY+K+F S +R+ +S L++  YL  T L  +  +L  L +R P+ PT    G+
Sbjct: 245 NYIKQFFSLQREIESSLIA-NYLRYTKLCESNTLLNGLTIR-PQKPTPTNCGL 295


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 287 AGEPIITFQTRIPFSMSVGISGFLIRSSMSMFGVRESIVMPR 162
           A  PI+TF   +   +   +SGFL   S+ ++ V  + ++PR
Sbjct: 230 AESPILTFTASVAAFIEFFLSGFLSYKSLFVWNVLFAFILPR 271


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +1

Query: 172 TMLSLTPNILMELRMRNPEMPTDIENGILVWKVIIGSPAYNGGLQPGDIVTK 327
           T    T N L EL  +  E     ENG L W+ ++  P    G   GD +TK
Sbjct: 78  TKRQYTLNHLEELEQQFAERMFS-ENGSLTWQELLRQPGKVQGSNKGDRLTK 128


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 22  LVNLDGEAIGINSMKVTSGISFAIPINYVKEFLSKRQTKSPLVSKR 159
           L N+  E   ++     + +  A+P+N  K+FL+  +T + LV  R
Sbjct: 171 LANIVHEEDVVHGSDYLTNVFIAVPLNLEKQFLNSYETLTDLVIPR 216


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 67  VTSGISFAIPINYVKEFLSKRQTK 138
           VTSG + A  I+ +KEF + + TK
Sbjct: 822 VTSGFTHASAIDKIKEFFADKDTK 845


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +3

Query: 72  LGDLFRDSHQLRQGIFVQKANKVTASIKTLPRHHYAFPHTEHTHGTANEESRDA 233
           LG+L+ +   +R  +FV +     A +  L +  Y    +   HG  ++  RD+
Sbjct: 659 LGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYT---SNSIHGGKDQHDRDS 709


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 406 RRSANCPWFSPTYYRH 359
           R   NCPW  P +Y H
Sbjct: 320 RLQKNCPWVIPFWYDH 335


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 441 DSQGYFLSPSNNVDPQTARGFLQH 370
           DS+G   SP++ + P+ + GF+QH
Sbjct: 562 DSRGPLPSPAHIMYPEGSPGFIQH 585


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 319 VTKINGQEVHSATDVYNMLEKTTGSLRID 405
           V  ING E HS   V   +  +TG + +D
Sbjct: 543 VPSINGNESHSNVHVIRQVVNSTGPVSLD 571


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 51   NQQYEGDLGDLFRDSHQLRQGIFVQKANKVTASIKTLPR 167
            +Q+     GD++  SH L +G ++ K   ++    TL R
Sbjct: 921  SQKQRVHYGDMYTSSHTLEKGEYLYKFQLLSVDPSTLER 959


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 464 VYKSNKIKKVLKILQSPE 517
           +YKS+KI+++LKIL   E
Sbjct: 643 LYKSSKIREILKILSLDE 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,014
Number of Sequences: 5004
Number of extensions: 54076
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)