Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_P04
(567 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27660.1 68418.m03315 DegP protease, putative similar to Seri... 108 3e-24
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo... 58 4e-09
At3g03380.1 68416.m00336 DegP protease, putative contains simila... 51 5e-07
At5g39830.1 68418.m04824 DegP protease, putative contains simila... 47 1e-05
At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to Deg... 41 7e-04
At4g18370.1 68417.m02724 protease HhoA, chloroplast (SPPA) (HHOA... 38 0.006
At3g16540.1 68416.m02112 DegP protease, putative contains simila... 37 0.008
At5g39830.2 68418.m04825 DegP protease, putative contains simila... 35 0.033
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 32 0.31
At4g17740.2 68417.m02649 C-terminal processing protease, putativ... 32 0.31
At4g17740.1 68417.m02648 C-terminal processing protease, putativ... 32 0.31
At4g30720.1 68417.m04354 expressed protein hypothetical protein ... 31 0.71
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 31 0.71
At1g05140.1 68414.m00517 membrane-associated zinc metalloproteas... 31 0.71
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 30 1.2
At3g16550.1 68416.m02113 DegP protease, putative contains simila... 30 1.2
At4g04740.1 68417.m00695 calcium-dependent protein kinase, putat... 29 1.6
At3g04450.1 68416.m00472 myb family transcription factor contain... 28 3.8
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 27 6.6
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 27 6.6
At1g72250.1 68414.m08353 kinesin motor protein-related 27 6.6
At3g57680.1 68416.m06426 peptidase S41 family protein similar to... 27 8.7
At1g65630.1 68414.m07444 DegP protease, putative contains simila... 27 8.7
>At5g27660.1 68418.m03315 DegP protease, putative similar to Serine
protease HTRA2, mitochondrial precursor (High
temperature requirement protein A2) (HtrA2) (Omi
stress-regulated endoprotease) (Serine proteinase OMI)
(SP:O43464) {Homo sapiens}
Length = 459
Score = 108 bits (259), Expect = 3e-24
Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 3/152 (1%)
Frame = +1
Query: 4 GNSGGPLVNLDGEAIGINSMKV--TSGISFAIPINYVKEFLSKRQTKSPLVSKRYLGITM 177
GNSGGPLVNLDGE IG+N MKV G+ F++PI+ V + + + KS V + ++G+ M
Sbjct: 309 GNSGGPLVNLDGEVIGVNIMKVLAADGLGFSVPIDSVSKII-EHFKKSGRVIRPWIGLKM 367
Query: 178 LSLTPNILMELRMRNPEMPTDIENGILVWKVIIGSPAYNGGLQPGDIVTKINGQEVHSAT 357
+ L I+ +L+ R+P P D+E G+LV VI GSPA G +PGD+V + +G+ V
Sbjct: 368 VELNNLIVAQLKERDPMFP-DVERGVLVPTVIPGSPADRAGFKPGDVVVRFDGKPVIEIM 426
Query: 358 DVYNMLEKTTGSLRIDVVR-GRQKITLTIVPE 450
D ++ +++ V R ++++TL ++PE
Sbjct: 427 D-----DRVGKRMQVVVERSNKERVTLEVIPE 453
>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
identical to DegP protease precursor GB:AF028842 from
[Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
7094-7098 (1998))
Length = 439
Score = 58.0 bits (134), Expect = 4e-09
Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Frame = +1
Query: 4 GNSGGPLVNLDGEAIGINS-----MKVTSGISFAIPINYVKEFLSKRQTKSPLVSKRYLG 168
GNSGGPL++ G IGIN+ +SG+ F+IP++ V + + + V++ LG
Sbjct: 280 GNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVD-QLVRFGKVTRPILG 338
Query: 169 ITMLSLTPNILMELRMRNPEMPTDIENGILVWKVIIGSPAYN--GGLQPGDIVTKINGQE 342
I P+ +E + + D K + S + G L GDI+T +NG +
Sbjct: 339 I---KFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTK 395
Query: 343 VHSATDVYNMLE--KTTGSLRIDVVRG--RQKITLTIVPE 450
V + +D+Y +L+ K + ++V+RG ++KI++T+ P+
Sbjct: 396 VSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVTLEPK 435
>At3g03380.1 68416.m00336 DegP protease, putative contains
similarity to degP GI:2623992 from [Bradyrhizobium
japonicum]
Length = 1097
Score = 51.2 bits (117), Expect = 5e-07
Identities = 43/170 (25%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Frame = +1
Query: 4 GNSGGPLVNLDGEAIGINS-MKVTSGISFAIPINYVKEFLSKRQT---------KSPLVS 153
G+SG P+++ G A+ +N+ K +S +F +P+ V LS Q K+ +
Sbjct: 204 GSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLQRVVRALSFLQKSIDSRTDKPKAVHIP 263
Query: 154 KRYLGITMLSLTPNILMELRMRNPE-------MPTDIENGILVWKVIIGSPAYNGGLQPG 312
+ L +T L + + L +R+ PT E G+LV ++ S + L+PG
Sbjct: 264 RGTLQMTFLHKGFDEIRRLGLRSETEQVVRHASPTG-ETGMLVVDSVVPSGPADKHLEPG 322
Query: 313 DIVTKINGQEVHSATDVYNMLEKTTGS-LRIDVVRGRQKITLTI-VPEMH 456
D++ ++NG + ++ N+L+ G L +++ RG Q +++++ V ++H
Sbjct: 323 DVLVRVNGTVLTQFLNLENLLDDGVGQILELEIERGGQPLSVSVSVQDLH 372
>At5g39830.1 68418.m04824 DegP protease, putative contains
similarity to DegP protease precursor GI:2565436 from
[Arabidopsis thaliana]
Length = 448
Score = 46.8 bits (106), Expect = 1e-05
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Frame = +1
Query: 4 GNSGGPLVNLDGEAIGINSMKVT-----SGISFAIPINYVKEFLSKRQTKSPLVSKRYLG 168
GNSGGPL++ G IGIN+ T +G+ FAIP + V + + + S ++ G
Sbjct: 290 GNSGGPLLDSKGNLIGINTAIFTQTGTSAGVGFAIPSSTVLKIVPQLIQFSKVLR---AG 346
Query: 169 ITMLSLTPN-ILMELRMRNPEMPTDIENGILVWKVII--GSPAYNGGLQPGDIVTKINGQ 339
I + L P+ + +L +RN + + L K + S + G + GDI+ ++ +
Sbjct: 347 IN-IELAPDPVANQLNVRNGALVLQVPGKSLAEKAGLHPTSRGFAGNIVLGDIIVAVDDK 405
Query: 340 EVHSATDVYNMLEKTT--GSLRIDVVRGRQKITLTI 441
V + ++ +L++ + + + + RG + + L I
Sbjct: 406 PVKNKAELMKILDEYSVGDKVTLKIKRGNEDLELKI 441
>At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to DegP2
protease GI:13172275 from [Arabidopsis thaliana];
identical to cDNA DegP2 protease (DEGP2) nuclear gene
for chloroplast product GI:13172274
Length = 607
Score = 40.7 bits (91), Expect = 7e-04
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Frame = +1
Query: 4 GNSGGPLVNLDGEAIG----INSMKVTSGISFAIPINYVKEFLSKRQTKSPLVSKRYLGI 171
GNSGGP N GE IG + + T I + IP V FL+ + LG+
Sbjct: 266 GNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNGKYTGYPCLGV 325
Query: 172 TMLSLTPNILMELRMRNPEMPTDIENGILVWKVIIGSPAYNGGLQPGDIVTKINGQEV 345
+ L L E ++PT+ G+LV +V S A + L+ GD++ + V
Sbjct: 326 LLQKLENPALRECL----KVPTN--EGVLVRRVEPTSDA-SKVLKEGDVIVSFDDLHV 376
>At4g18370.1 68417.m02724 protease HhoA, chloroplast (SPPA) (HHOA)
identical to SP|Q9SEL7 Protease HhoA, chloroplast
precursor (EC 3.4.21.-) {Arabidopsis thaliana}
Length = 323
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 7/42 (16%)
Frame = +1
Query: 4 GNSGGPLVNLDGEAIGINSMKVT-------SGISFAIPINYV 108
GNSGGPL++ G IG+N+ T SG++FAIPI+ V
Sbjct: 264 GNSGGPLLDSYGHTIGVNTATFTRKGSGMSSGVNFAIPIDTV 305
>At3g16540.1 68416.m02112 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 555
Score = 37.1 bits (82), Expect = 0.008
Identities = 33/110 (30%), Positives = 53/110 (48%)
Frame = +1
Query: 7 NSGGPLVNLDGEAIGINSMKVTSGISFAIPINYVKEFLSKRQTKSPLVSKRYLGITMLSL 186
NSGGP++ + + +G V I F IP +K F++ Q S++Y L L
Sbjct: 257 NSGGPVI-MGNKVVG-----VVYEIGFVIPTPIIKHFITSVQE-----SRQYSCFGSLDL 305
Query: 187 TPNILMELRMRNPEMPTDIENGILVWKVIIGSPAYNGGLQPGDIVTKING 336
+ L +++RN + GIL+ K+ S AY L+ DI+ I+G
Sbjct: 306 SYQSLENVQIRNHFKMSHEMTGILINKINSSSGAYK-ILRKDDIILAIDG 354
>At5g39830.2 68418.m04825 DegP protease, putative contains
similarity to DegP protease precursor GI:2565436 from
[Arabidopsis thaliana]
Length = 434
Score = 35.1 bits (77), Expect = 0.033
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Frame = +1
Query: 4 GNSGGPLVNLDGEAIGINSMKVTSGISFAIPINYVKEFLSKRQTKSPLVSKRYLGITMLS 183
GNSGGPL++ G IGIN+ T + +P + +F SK +
Sbjct: 290 GNSGGPLLDSKGNLIGINTAIFTQTVLKIVP--QLIQF-----------SKVLRAGINIE 336
Query: 184 LTPN-ILMELRMRNPEMPTDIENGILVWKVII--GSPAYNGGLQPGDIVTKINGQEVHSA 354
L P+ + +L +RN + + L K + S + G + GDI+ ++ + V +
Sbjct: 337 LAPDPVANQLNVRNGALVLQVPGKSLAEKAGLHPTSRGFAGNIVLGDIIVAVDDKPVKNK 396
Query: 355 TDVYNMLEKTT--GSLRIDVVRGRQKITLTI 441
++ +L++ + + + + RG + + L I
Sbjct: 397 AELMKILDEYSVGDKVTLKIKRGNEDLELKI 427
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 31.9 bits (69), Expect = 0.31
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Frame = +1
Query: 4 GNSGGPLVNLDGEAIGI--NSMK--VTSGISFAIPINYVKEFLSKRQTKSPLVSKRYLGI 171
GNSGGP N G+ +GI S+K I + IP + F+ + +Y G
Sbjct: 276 GNSGGPAFNDKGKCVGIAFQSLKHEDAENIGYVIPTPVIVHFIQDYEKHD-----KYTGF 330
Query: 172 TMLSLTPNILMELRMRNPEMPTDIENGILVWKVIIGSPAYNGGLQPGDIVTKINGQEV 345
+L + + +R + G+ + ++ +P + L+P DI+ +G +
Sbjct: 331 PVLGIEWQKMENPDLRKSMGMESHQKGVRIRRIEPTAPE-SQVLKPSDIILSFDGVNI 387
>At4g17740.2 68417.m02649 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 505
Score = 31.9 bits (69), Expect = 0.31
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +1
Query: 250 GILVWKVIIGSPAYNGGLQPGDIVTKINGQEVHSAT--DVYNMLEKTTGS-LRIDVVRGR 420
G++V G PA G+ PGD++ I+ + T D ML+ GS + + + G
Sbjct: 218 GLVVISAAPGGPANRAGILPGDVIQGIDNTTTETLTIYDAAQMLQGPEGSAVELAIRSGP 277
Query: 421 QKITLTIVPE 450
+ LT+ E
Sbjct: 278 ETRLLTLTRE 287
>At4g17740.1 68417.m02648 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 515
Score = 31.9 bits (69), Expect = 0.31
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +1
Query: 250 GILVWKVIIGSPAYNGGLQPGDIVTKINGQEVHSAT--DVYNMLEKTTGS-LRIDVVRGR 420
G++V G PA G+ PGD++ I+ + T D ML+ GS + + + G
Sbjct: 228 GLVVISAAPGGPANRAGILPGDVIQGIDNTTTETLTIYDAAQMLQGPEGSAVELAIRSGP 287
Query: 421 QKITLTIVPE 450
+ LT+ E
Sbjct: 288 ETRLLTLTRE 297
>At4g30720.1 68417.m04354 expressed protein hypothetical protein -
Synechocystis sp. (strain PCC 6803),PIR2:S76076
Length = 749
Score = 30.7 bits (66), Expect = 0.71
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 NSGGPLVNLDGEAIGINSMKVTSGISFAIPINYVKEFLSKRQTKSPLVSKRY-LGITMLS 183
N GPL ++ + + G F +P+ V +FL + +++PL Y LG+ +
Sbjct: 575 NLKGPLAGIEFQREFERRAAIMGGGDFTVPVQRVTDFLQNKLSETPLPPSSYRLGVKSAN 634
Query: 184 L 186
L
Sbjct: 635 L 635
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 30.7 bits (66), Expect = 0.71
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +3
Query: 54 QQYEGDLGDLF--RDS---HQLRQGIFVQKANKVTASIKTLPRHHYAFPHTEHTHGTANE 218
++Y D G LF RDS H+ Q++ + S+ +LP HH FP+ ++T+ + N
Sbjct: 182 KEYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTSLTSLPSHH--FPYGQNTNNSNNN 239
Query: 219 ES 224
S
Sbjct: 240 AS 241
>At1g05140.1 68414.m00517 membrane-associated zinc metalloprotease,
putative similar to Hypothetical zinc metalloprotease
All3971 (SP:Q8YQ64) [strain PCC 7120] {Anabaena sp.};
Similar to Synechocystis hypothetical protein
(gb|D90908);contains Pfam PF00595: PDZ domain (Also
known as DHR or GLGF); contains TIGRFAM TIGR00054:
membrane-associated zinc metalloprotease, putative
Length = 441
Score = 30.7 bits (66), Expect = 0.71
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Frame = +1
Query: 250 GILVWKVIIGSPAYNGGLQPGDIVTKINGQEV-----HSATDVYNMLEKT-TGSLRIDVV 411
G+LV V S A GL PGD++ ++G E+ S + V +++++ ++ + +
Sbjct: 206 GVLVPDVKSFSAASRDGLLPGDVILAVDGTELSNSGSDSVSKVVDVVKRNPEHNVLLRIE 265
Query: 412 RGRQKITLTIVPE 450
RG++ + I P+
Sbjct: 266 RGKESFEIRITPD 278
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 453 HLGHDSQGYFLSPSNNVDPQTARGFLQHIIDIGSAV 346
+LG+ S G FL+PSNN +A+ H +IGS V
Sbjct: 61 NLGYSSVGSFLTPSNNQQSYSAK--KTHSTNIGSTV 94
>At3g16550.1 68416.m02113 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 491
Score = 29.9 bits (64), Expect = 1.2
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 4 GNSGGPLVNLD---GEAIGINSMKVTSGISFAIPINYVKEFLSKRQTKSPLVSKRYLGIT 174
GNSGGP++ D G I K ++G+ IP ++ F++ + S G
Sbjct: 212 GNSGGPVITGDKVLGVLFQILGDKKSTGV--VIPTPIIRHFITGAEESS---HNAVFGSL 266
Query: 175 MLSLTPNILMELRMRNPEMPTDIENGILVWKVIIGSPAYNGGLQPGDIVTKINGQEVHS 351
+LS + ++RN + GIL+ K+ S A+ L+ DI+ I+G V S
Sbjct: 267 VLSC--QSMKNAQIRNHFKMSPETTGILINKINSSSGAHK-ILRKDDIILAIDGVPVLS 322
>At4g04740.1 68417.m00695 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase [Lycopersicon esculentum]
gi|19171502|emb|CAC87494
Length = 520
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 168 HHYAFPHTEHTHGTANEESRDAHGH*KRDSCLES 269
H Y H EH H +D +GH RD LES
Sbjct: 436 HRYKLHHDEHVHKAFQHLDKDKNGHITRDE-LES 468
>At3g04450.1 68416.m00472 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 438
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 75 GDLFRDSHQLRQGIFVQKANKVTASIKTLPRHHYAFPH 188
G+LF S G++V +++ S+ T+PR H
Sbjct: 61 GNLFSSSSGFCNGVYVSSSSQARPSVSTVPRDRITVAH 98
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/70 (22%), Positives = 26/70 (37%)
Frame = +3
Query: 180 FPHTEHTHGTANEESRDAHGH*KRDSCLESDYWLAGLQRWTSTGRYSDKDQRSGSAQRYR 359
+P +T G+ + S D R L+ + G+ Y + + G Q R
Sbjct: 351 YPRESYTRGSPSHPSHDEFDRYPRAHSLQMPSYAGGMNHDFVDYMYHNNPRARGQGQGSR 410
Query: 360 CL*YVGENHG 389
+G NHG
Sbjct: 411 ISGEMGRNHG 420
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 109 KEFLSKRQTKSPLVSKRYLGITMLSLTPNILMELRMRN 222
K F S L+ Y G+ M++LTPNI M L +R+
Sbjct: 1248 KMFWSLYSIFCSLLIFNYCGMLMVALTPNIHMALTLRS 1285
>At1g72250.1 68414.m08353 kinesin motor protein-related
Length = 1195
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 283 PAYNGGLQPGDIVTKINGQEV 345
P NGGL+ D++ K+N QE+
Sbjct: 1034 PLPNGGLKYSDLIEKVNNQEM 1054
>At3g57680.1 68416.m06426 peptidase S41 family protein similar to
PSII D1 protein processing enzyme (GI::7268527)
[Arabidopsis thaliana]; similar to SP|Q55669
Carboxyl-terminal processing protease precursor
(Photosystem II D1 protein processing peptidase) (EC
3.4.21.102) [strain PCC 6803] {Synechocystis sp.};
contains Pfam profile PF03572: Peptidase family S41B
Length = 516
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 253 ILVWKVIIGSPAYNGGLQPGDIVTKINGQEV 345
++V + GSPA G+ G+ + +ING+++
Sbjct: 210 LVVMSCVEGSPADRAGIHEGEELVEINGEKL 240
>At1g65630.1 68414.m07444 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 559
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 319 VTKINGQEVHSATDVYNMLEK-TTGSLRIDVVRGR 420
V K+NG +VH+ +Y ++E+ T ++R+D+ + +
Sbjct: 477 VKKVNGVQVHNLKHLYKLVEECCTETVRMDLEKDK 511
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,225,326
Number of Sequences: 28952
Number of extensions: 290537
Number of successful extensions: 753
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -