Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P03
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_59317| Best HMM Match : APT (HMM E-Value=7.8)                       28   4.3  
SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)                      28   4.3  
SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)                       28   5.7  
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)                     27   7.6  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)                   27   7.6  

>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1460

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 113 KKVLSLFQDVDQVNVDDEYYKIGKDY-DVEAN-IDXYTNKKAVEEFLKLYRI 262
           ++ +SLF+DVD+   D+ Y KI   Y D+  + ID Y    +   F KL ++
Sbjct: 93  ERCISLFKDVDKYKHDERYLKIWIQYADLCTDPIDVYDYMHSQSMFSKLAKL 144


>SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 80  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKA-VEEF 244
           KD D   V +QK VL + + +  +++     K+ +DY VE ++     KK  V +F
Sbjct: 401 KDADIAPVPKQKPVLDINKHLRPISLTPVLSKLAEDYIVEQHLKPAVLKKVDVNQF 456


>SB_59317| Best HMM Match : APT (HMM E-Value=7.8)
          Length = 229

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 80  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKA-VEEF 244
           KD D   V +QK VL + + +  +++     K+ +DY VE ++     KK  V +F
Sbjct: 35  KDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 90


>SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)
          Length = 279

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 80  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKA-VEEF 244
           KD D   V +QK VL + + +  +++     K+ +DY VE ++     KK  V +F
Sbjct: 108 KDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 163


>SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)
          Length = 62

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 43  QCGVTENVSLQDKRCRRSVCG 105
           +C + +NV   D+ CRRS CG
Sbjct: 29  KCHMEKNVIFDDRACRRSRCG 49


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 80  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKA-VEEF 244
           KD D   V +QK VL + + +  +++     K+ +DY VE ++     KK  V +F
Sbjct: 681 KDADIAPVPKQKPVLDVNKHLWPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 736


>SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)
          Length = 602

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 80  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKK 229
           KD D   V +QK +L + + +  +++     K+ +DY VE ++     KK
Sbjct: 347 KDADIAPVPKQKPILDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKK 396


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 17   AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGK 184
            +G+I L + + V+   Y+FK K  D +F      +L +   +DQ N   ++   G+
Sbjct: 1370 SGIITLSREAPVNVWEYNFKVKATDGIFTATTDVLLDI---IDQNNHKPQFTNCGE 1422


>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
          Length = 773

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 80  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKA-VEEF 244
           KD D   V +QK VL + + +  +++     K+ +DY VE ++     KK  V +F
Sbjct: 392 KDADIAPVPKQKPVLDVNKHLWPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 447


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,120,335
Number of Sequences: 59808
Number of extensions: 326877
Number of successful extensions: 1515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)