Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_P01
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    26   3.7  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    25   6.5  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   8.5  

>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 501 FMYHYWFIRSTVLSSDVIMN 442
           FM+H+W++   +  S+++MN
Sbjct: 188 FMHHHWYLHRDLKPSNLLMN 207


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 163 YCYKNSVNIKFYH 201
           YCYKN+  I F+H
Sbjct: 27  YCYKNNKPISFFH 39


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 198 VEFNVYTIF-IAILIDNGYC*NLYLIFFVFVINIDYYVFKNFIEARLQL 55
           V++  Y +F +  L D     +  LIF  F+    YY+F NF+ + LQ+
Sbjct: 334 VKYARYPVFALKSLKDRTILGSCVLIFTYFM---SYYIFSNFLTSFLQV 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,039
Number of Sequences: 5004
Number of extensions: 23968
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)