Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O24
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    27   1.2  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   1.6  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   4.8  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   4.8  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   8.4  

>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -3

Query: 491 QDCSSDTVCSSEHVLRTDE*ATA*QLHMIKTLIFDHHKPWILXDFCVISTDNFINNGVF 315
           Q C S    SS+ +L  ++   A Q+H  + +  D ++  +  D  V S ++F+NN  F
Sbjct: 108 QSCKSACENSSQSLLNVEQ-QYAQQVHFWEKIRTDIYREGLRSDAAVKSLNDFVNNVSF 165


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = -1

Query: 382 TSHGYXVIFVSFPPTILLTTVSSTPQHSLLLS-------SGKAVTALEHLSLRVISSGFI 224
           TS GY     S P +I  ++ S  P +S   S       SG  +T+        +S    
Sbjct: 113 TSEGYADSNDSRPSSISNSSESPAPINSATASMSPANNTSGNNITSPNVRGELDMSGNIA 172

Query: 223 SGGGPQHTLNVSGPLQTD 170
             GGP +T + SGP+  D
Sbjct: 173 MSGGPTNTASTSGPVPHD 190


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 60  KTPDDKPGICVGLYNCEHITYMMLDKTRKSKMDYVRQSVCNGPE 191
           +T D KP + V  Y C+   Y +  + R+    ++  S C   E
Sbjct: 190 RTSDVKPSLTVNAYTCDRCGYEVFQEIRQK--TFLPMSECPSDE 231


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 168 VERNPFYSFWSYLASYK*YAHSCTNRHK 85
           V R  FYS +SY +S++  A+S   RH+
Sbjct: 151 VRRPRFYSSYSYPSSHQDPAYSSFKRHR 178


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 398 LIFDHHKPWILXDFCVISTDNFINNGVFDSTTLVVA 291
           L+F + KP    + CV+ST NF  N +F+  + + +
Sbjct: 130 LVFGNLKP----NVCVVSTPNFEFNTIFEKLSTLTS 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,647
Number of Sequences: 5004
Number of extensions: 42770
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)