Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O24
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 29 1.3
At2g38320.1 68415.m04708 expressed protein 29 1.8
At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family prote... 29 1.8
At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family prote... 29 2.3
At4g33380.1 68417.m04745 expressed protein 27 5.4
At3g16620.1 68416.m02124 chloroplast outer membrane protein, put... 27 7.1
At3g51350.1 68416.m05622 aspartyl protease family protein contai... 23 7.9
At1g32860.1 68414.m04049 glycosyl hydrolase family 17 protein si... 27 9.4
At1g16120.1 68414.m01932 wall-associated kinase, putative contai... 27 9.4
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 445 ELMSEPPHSSFI*SKLSYSITTSHGYXVIFVSFPPT 338
E++ E +F S YS T HGY + + S PT
Sbjct: 335 EMIEESAVQTFFGSSQEYSSNTDHGYILFYESLGPT 370
>At2g38320.1 68415.m04708 expressed protein
Length = 410
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 126 MLDKTRKSKMDYVRQSVCNGPETFSVCCGPPPEINPEDMTLNERCSRAVTAFPLESN 296
+L++ R +M YV S+ G VC NP+ M ++ S +T LE N
Sbjct: 120 LLERLRNKRMVYVGDSLNRGQWVSMVCMVSSVITNPKAMYMHNNGSNLITFKALEYN 176
>At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family protein
similar to ethylene-induced esterase [Citrus sinensis]
GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
serpentina] GI:6651393; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 263
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 360 ITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTA 464
I YP +VIE E DHM + C L+S + A
Sbjct: 225 IHNYPANLVIEMEETDHMPMFCKPQLLSDHLLAIA 259
>At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family protein
similar to ethylene-induced esterase [Citrus sinensis]
GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
serpentina] GI:6651393; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 272
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 360 ITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTA 464
I YP +VIE E DH+ L C L+S + A
Sbjct: 234 IDNYPPNLVIEMEGTDHLPLFCKPQLLSDHLLAIA 268
>At4g33380.1 68417.m04745 expressed protein
Length = 328
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 416 AAMRW-LTHQFEVRAHCCTLC 475
AA+RW LTH E A CC C
Sbjct: 229 AAVRWGLTHHKESAADCCQAC 249
>At3g16620.1 68416.m02124 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1089
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 180 NGPETFSVCCGPPPEINPEDMTLNERCSRAVTAFPLESNNECCGVEDTVVNK 335
N E F G + PE + + FPL SN+E C +E+T N+
Sbjct: 36 NEEEVFEEAIGSQEGLKPESL----KTDVLQEDFPLASNDEVCDLEETSRNE 83
>At3g51350.1 68416.m05622 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 528
Score = 23.4 bits (48), Expect(2) = 7.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 216 PPEINPEDMTLNERCSRAVTAFPLES 293
PP INP + T N A PL S
Sbjct: 491 PPPINPRNSTGNPGTGGAANLIPLAS 516
Score = 21.8 bits (44), Expect(2) = 7.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 165 RQSVCNGPETFSVCCGPPPEI 227
+QS+C E+ PPPE+
Sbjct: 448 KQSLCFEDESLESTTPPPPEV 468
>At1g32860.1 68414.m04049 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 426
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 424 HSSFI*SKLS--YSITTSHGYXVIFVSFPPT 338
HS+ I + LS S+TT+H ++ SFPP+
Sbjct: 142 HSALITAGLSDQISVTTAHSLSILKSSFPPS 172
>At1g16120.1 68414.m01932 wall-associated kinase, putative contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 730
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = +3
Query: 135 KTRKSKMDYVRQSVCNGPETFSVCCGPPPEINPEDMTLNERCSRAVTAFPLESNNECC-- 308
KT+ S ++ SV S PPP I+ + N+ C FP + C
Sbjct: 2 KTKTSIFQFIVASVLTLLINDSSAATPPPPISNSSTSCNKTCGGISIPFPFGIGGKDCYL 61
Query: 309 -GVEDTVVNKIVGGNDTKI 362
G + + N ++T +
Sbjct: 62 NGWYEVICNTTTSDSNTTV 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,253,149
Number of Sequences: 28952
Number of extensions: 227945
Number of successful extensions: 575
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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